Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 >seq1 Length=2302571 Score = 96.9 bits (106), Expect = 3e-15 Identities = 213/311 (68%), Gaps = 14/311 (5%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 ||||||||||||||||| || || |||| || || |||||||| ||||| | || || Sbjct 1624343 ATATGGCAAATGTACAAGAAGGCTGAGGCTTCTTTCTGGACAGCCGAAGAGATAGACCTG 1624402 Query 43790 ACTAAAGACTTAGCAC-ATTGG----ATTGCATTAAAACCAC-AAGAAAAACATTTTATA 43843 | || || || |||| | ||| || || | ||| || | ||||| |||| || Sbjct 1624403 TCCAAGGA-TTTGCACGACTGGAATAATCGCCT--GAACGACGATGAAAAGTATTTCATT 1624459 Query 43844 TCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGT 43903 ||| | ||||| || |||||||| || || || ||||| ||||| ||||| Sbjct 1624460 TCTCACATCTTGGCATTCTTTGCTGCCTCGGATGGCATCGTCAACGAAAACCTGGTTGAG 1624519 Query 43904 CGGTT-TGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 ||||| ||| || || || | || ||||| || ||||| || ||||| || || Sbjct 1624520 CGGTTCAGCG-GCGAGGTGCAGGTTCCTGAAGCCCGTTGTTTCTACGGGTTCCAGATCAT 1624578 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGG 44022 || || ||||| ||||| || | ||| | | |||| || ||||| ||||| || Sbjct 1624579 GATGGAGAATATCCATTCCGAGACGTATTCTTTATTGATCGACACGTATATCAAGGA--- 1624635 Query 44023 GCACGAGAAGC 44033 ||||| | ||| Sbjct 1624636 GCACGCGCAGC 1624646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453825046245