Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq1 96.9 3e-15
>seq1
Length=2302571
Score = 96.9 bits (106), Expect = 3e-15
Identities = 213/311 (68%), Gaps = 14/311 (5%)
Strand=Plus/Plus
Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789
||||||||||||||||| || || |||| || || |||||||| ||||| | || ||
Sbjct 1624343 ATATGGCAAATGTACAAGAAGGCTGAGGCTTCTTTCTGGACAGCCGAAGAGATAGACCTG 1624402
Query 43790 ACTAAAGACTTAGCAC-ATTGG----ATTGCATTAAAACCAC-AAGAAAAACATTTTATA 43843
| || || || |||| | ||| || || | ||| || | ||||| |||| ||
Sbjct 1624403 TCCAAGGA-TTTGCACGACTGGAATAATCGCCT--GAACGACGATGAAAAGTATTTCATT 1624459
Query 43844 TCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGT 43903
||| | ||||| || |||||||| || || || ||||| ||||| |||||
Sbjct 1624460 TCTCACATCTTGGCATTCTTTGCTGCCTCGGATGGCATCGTCAACGAAAACCTGGTTGAG 1624519
Query 43904 CGGTT-TGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962
||||| ||| || || || | || ||||| || ||||| || ||||| || ||
Sbjct 1624520 CGGTTCAGCG-GCGAGGTGCAGGTTCCTGAAGCCCGTTGTTTCTACGGGTTCCAGATCAT 1624578
Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGG 44022
|| || ||||| ||||| || | ||| | | |||| || ||||| ||||| ||
Sbjct 1624579 GATGGAGAATATCCATTCCGAGACGTATTCTTTATTGATCGACACGTATATCAAGGA--- 1624635
Query 44023 GCACGAGAAGC 44033
||||| | |||
Sbjct 1624636 GCACGCGCAGC 1624646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397453825046245
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |