Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq2 107 6e-18 >seq2 Length=1075658 Score = 107 bits (118), Expect = 6e-18 Identities = 250/369 (68%), Gaps = 20/369 (5%) Strand=Plus/Minus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| | || || ||||||||| || | |||||||| ||||| ||| ||| || Sbjct 442189 CCCATGCTGCGAGTCTTCAACAACACTGCCAGATACGTCGACCAAGGCGGCAACAAGCGA 442130 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGAACGGTTTTTA 255097 || || || ||| |||||||||||||||| ||||||||||| | ||||| || Sbjct 442129 CCGGGCGCCTTCGCCATCTACCTGGAGCCCTGGCACGCCGATGTCTTTGAA-----TTCC 442075 Query 255098 CTGCTGTCCGACAAGAC--CGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTG 255155 || | || || | || ||||| ||||| | ||| |||||| ||| | || Sbjct 442074 TTGATCTCAGAAAGAACCACGGCAAGGAGGAAGTCCGCGCTCGCGACCTCTTCCTTGCGC 442015 Query 255156 TCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGA--GAC--CTGGAGCCTC 255211 | ||| | ||| || || || || ||||| ||||| || | | ||||| |||| Sbjct 442014 TGTGGATCCCCGACCTCTTCAT--GAAGCGTG--TCGAGAAGAATGGCGACTGGACCCTC 441959 Query 255212 ATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTG 255271 ||||| |||||| || || || || | ||||| | || ||||||||||| || Sbjct 441958 ATGTGCCCCAACGAATGCCCTGGGCTCGCCGACTGCTACGGCGACGAGTTTGAGGCTTTG 441899 Query 255272 TATCTGGAGTACGAGCGTGCCGGCCG-GTTCGTACGCCAAGTGCCCGCGAAGAAGATCTG 255330 ||| |||||||||| | ||||| | || | | ||| | | ||| ||||| | || Sbjct 441898 TATGAAAAGTACGAGCGCGAAGGCCGTGGCCGCAAGACAA-TCCGCGCCCAGAAGCTGTG 441840 Query 255331 GAACACGAT 255339 | || |||| Sbjct 441839 GTACTCGAT 441831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588326862600805