Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_027925.1
Length=496396
Score E
Sequences producing significant alignments: (Bits) Value
seq2 107 6e-18
>seq2
Length=1075658
Score = 107 bits (118), Expect = 6e-18
Identities = 250/369 (68%), Gaps = 20/369 (5%)
Strand=Plus/Minus
Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040
|| ||| | || || ||||||||| || | |||||||| ||||| ||| ||| ||
Sbjct 442189 CCCATGCTGCGAGTCTTCAACAACACTGCCAGATACGTCGACCAAGGCGGCAACAAGCGA 442130
Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGAACGGTTTTTA 255097
|| || || ||| |||||||||||||||| ||||||||||| | ||||| ||
Sbjct 442129 CCGGGCGCCTTCGCCATCTACCTGGAGCCCTGGCACGCCGATGTCTTTGAA-----TTCC 442075
Query 255098 CTGCTGTCCGACAAGAC--CGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTG 255155
|| | || || | || ||||| ||||| | ||| |||||| ||| | ||
Sbjct 442074 TTGATCTCAGAAAGAACCACGGCAAGGAGGAAGTCCGCGCTCGCGACCTCTTCCTTGCGC 442015
Query 255156 TCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGA--GAC--CTGGAGCCTC 255211
| ||| | ||| || || || || ||||| ||||| || | | ||||| ||||
Sbjct 442014 TGTGGATCCCCGACCTCTTCAT--GAAGCGTG--TCGAGAAGAATGGCGACTGGACCCTC 441959
Query 255212 ATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTG 255271
||||| |||||| || || || || | ||||| | || ||||||||||| ||
Sbjct 441958 ATGTGCCCCAACGAATGCCCTGGGCTCGCCGACTGCTACGGCGACGAGTTTGAGGCTTTG 441899
Query 255272 TATCTGGAGTACGAGCGTGCCGGCCG-GTTCGTACGCCAAGTGCCCGCGAAGAAGATCTG 255330
||| |||||||||| | ||||| | || | | ||| | | ||| ||||| | ||
Sbjct 441898 TATGAAAAGTACGAGCGCGAAGGCCGTGGCCGCAAGACAA-TCCGCGCCCAGAAGCTGTG 441840
Query 255331 GAACACGAT 255339
| || ||||
Sbjct 441839 GTACTCGAT 441831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1588326862600805
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |