Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq2 174 2e-38
>seq2
Length=1075658
Score = 174 bits (192), Expect = 2e-38
Identities = 1131/1798 (63%), Gaps = 31/1798 (2%)
Strand=Plus/Plus
Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428
|||||||| || |||||||| || | ||||| || | ||||| || | || ||||
Sbjct 440793 TAGTACATGCCAGTCTTGAGACCCAGCTTCCACCCGGCAAAGTGCATCGACGTGATCTTG 440852
Query 110429 GACATCGTTGGACTTTCCATGAAGAGGTTCATA--CTTTGACTTTGGTCAATGAAGCGCC 110486
||| ||||| | |||| | ||| | | || |||| |||| || ||| |
Sbjct 440853 CCCATGGTTGGGTCCTTCATGTGAATGTTGAGAGACTGGGACT--GGTCGATAAAGGCAC 440910
Query 110487 CCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGA 110546
| || | || ||||| | | |||| | | ||||||||| || || || |
Sbjct 440911 CGCGGTCGGCGGCCATCTGCACCACATGACGCTGCGAAATTTCCCAGACCGTCTTGTACA 440970
Query 110547 GATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCA 110606
|| ||| | || | || || | | ||| |||||||| || || | | | |
Sbjct 440971 GAGCCTTTACCTCGCCGGGAATGTTGGGGATGTTCTGGATCGAGCCGTTCTCGGCAATGA 441030
Query 110607 TGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCT 110666
|| ||| |||||| | | ||||| ||||| || | ||| || |||| ||
Sbjct 441031 TGCGATTCTTCATGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATG 441090
Query 110667 TGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATG 110726
|||||| | ||||| || || ||| | || | |||| ||||| | ||||| |
Sbjct 441091 GGTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGG 441150
Query 110727 GTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCA 110786
| || ||||| || || || |||| || || | ||||| || || ||||| || || |
Sbjct 441151 GCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGA 441210
Query 110787 TCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGT 110846
|| || ||| |||| || | ||||||||| | |||||||| |||||| ||
Sbjct 441211 GCAGCAGCGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCACTCCC 441270
Query 110847 A---GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGG 110903
| || | | || |||| |||| ||||||||||||| || | |||| || || |
Sbjct 441271 ACAAGTCGGAC--GGCGTCACGTTCC-ACATGTCAAACTGCAGGATGCCTTCAGAGGCCG 441327
Query 110904 GAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA-ATTCACAGCTCGCCTCC 110962
|||| |||| || || |||| ||| | | | |||| | ||| | |||| |
Sbjct 441328 GAGATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCG-ACGCCGTC 441386
Query 110963 AGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA 111022
| || ||||| || ||||| ||||| || | |||| ||| || || ||
Sbjct 441387 AAGGCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGAC 441446
Query 111023 TCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 111082
||||| | ||| | || || | || || | ||||||||||| | ||||||
Sbjct 441447 TCAAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATG 441506
Query 111083 GGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATG 111142
|| | || ||||| || || || || | ||||| || || ||| |||
Sbjct 441507 GGACGATGCCGCATGTTGCTGTTGCGTGCTTCTTGGACGGGGTAGTGGTTGACGTCGATG 441566
Query 111143 ACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAA 111202
| ||| |||||| | ||| | |||| || || || |||| | || |
Sbjct 441567 ATCTTGTTGAGATTTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGAAGTCGTAC 441626
Query 111203 GTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCC 111262
||| || | | ||| | || ||||| | || || | ||||| || ||
Sbjct 441627 TTGCCTTGGTCGTAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGACGGCA 441686
Query 111263 GTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTC 111322
||| || | | |||||| | ||| || || || | |||||| || ||| ||
Sbjct 441687 ACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAATGGTT 441746
Query 111323 CCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTC 111382
||||| ||||| ||||| |||||| ||||||| ||||||||| ||||| |||| |
Sbjct 441747 CCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGGGGTTG 441806
Query 111383 CCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATC-GGCGGCTGGTACAATGG 111440
|| ||||| ||||| | | ||| || | | ||| | | || || || | | | |
Sbjct 441807 CCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGGGCGCGGATTGTCTTG 441866
Query 111441 CGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCG 111500
|| | | || || || |||||||||| || | || |||||||| || ||
Sbjct 441867 CG--GCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGTAGC 441924
Query 111501 CGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCA 111559
||||| ||| || || || || || || || | || | ||| | ||| | |||
Sbjct 441925 AGTCGGCGAGCCCAGG-GCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCG 441983
Query 111560 ACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCC 111619
|| ||||||||||| ||||| || |||||||| | ||||| || | | || |
Sbjct 441984 ACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACT 442043
Query 111620 TCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGC 111679
|| || | || ||||| || | |||||||| || | || ||| |||||||| |||
Sbjct 442044 TCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGC 442103
Query 111680 TCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCT 111736
|| || |||| |||| | ||| ||| || |||| | || || | ||
Sbjct 442104 TCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCA 442163
Query 111737 GTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGA 111796
||| ||| || || || ||||| |||| | || | || || || || || |
Sbjct 442164 GTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCA 442223
Query 111797 ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTT 111856
|| ||| | || | | |||| || || || ||||| || ||| ||
Sbjct 442224 ATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTA 442283
Query 111857 GAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGT 111914
|| || | ||||| | | | | ||||| | ||||| || | ||| ||| |||||
Sbjct 442284 GAAATCATGGCGCA-AGT-CTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCA 442341
Query 111915 TGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTG 111974
|| ||| |||||||| ||| | ||| || || || || ||||||||||| |
Sbjct 442342 TGTCGACGAGGAAGCACGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAG 442401
Query 111975 GTGTTGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATC 112032
||| ||||| |||| | | || |||||| || ||| || |||| ||| ||
Sbjct 442402 GTGAGGCGTGGGTGAAGAATTTACT--GGACATGAGGTTGTAGGTTTCCAGGACGCGCTC 442459
Query 112033 AATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCAT 112092
||||| || || |||||||| || || ||||||| ||||| ||| || ||| |
Sbjct 442460 AATGTTGTCTCCCCAGATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGAC 442519
Query 112093 GAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149
| |||| || ||| | ||||| | || ||| || || |||| |||||||||
Sbjct 442520 AATCTTGCCGTCCAGCTTCAGGAGATACGATC-GCTCCAGCGTCTTGAAACCAAAGTA 442576
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628028475170400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |