Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 174 2e-38 >seq2 Length=1075658 Score = 174 bits (192), Expect = 2e-38 Identities = 1131/1798 (63%), Gaps = 31/1798 (2%) Strand=Plus/Plus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 |||||||| || |||||||| || | ||||| || | ||||| || | || |||| Sbjct 440793 TAGTACATGCCAGTCTTGAGACCCAGCTTCCACCCGGCAAAGTGCATCGACGTGATCTTG 440852 Query 110429 GACATCGTTGGACTTTCCATGAAGAGGTTCATA--CTTTGACTTTGGTCAATGAAGCGCC 110486 ||| ||||| | |||| | ||| | | || |||| |||| || ||| | Sbjct 440853 CCCATGGTTGGGTCCTTCATGTGAATGTTGAGAGACTGGGACT--GGTCGATAAAGGCAC 440910 Query 110487 CCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGA 110546 | || | || ||||| | | |||| | | ||||||||| || || || | Sbjct 440911 CGCGGTCGGCGGCCATCTGCACCACATGACGCTGCGAAATTTCCCAGACCGTCTTGTACA 440970 Query 110547 GATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCA 110606 || ||| | || | || || | | ||| |||||||| || || | | | | Sbjct 440971 GAGCCTTTACCTCGCCGGGAATGTTGGGGATGTTCTGGATCGAGCCGTTCTCGGCAATGA 441030 Query 110607 TGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCT 110666 || ||| |||||| | | ||||| ||||| || | ||| || |||| || Sbjct 441031 TGCGATTCTTCATGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATG 441090 Query 110667 TGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATG 110726 |||||| | ||||| || || ||| | || | |||| ||||| | ||||| | Sbjct 441091 GGTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGG 441150 Query 110727 GTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCA 110786 | || ||||| || || || |||| || || | ||||| || || ||||| || || | Sbjct 441151 GCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGA 441210 Query 110787 TCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGT 110846 || || ||| |||| || | ||||||||| | |||||||| |||||| || Sbjct 441211 GCAGCAGCGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCACTCCC 441270 Query 110847 A---GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGG 110903 | || | | || |||| |||| ||||||||||||| || | |||| || || | Sbjct 441271 ACAAGTCGGAC--GGCGTCACGTTCC-ACATGTCAAACTGCAGGATGCCTTCAGAGGCCG 441327 Query 110904 GAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA-ATTCACAGCTCGCCTCC 110962 |||| |||| || || |||| ||| | | | |||| | ||| | |||| | Sbjct 441328 GAGATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCG-ACGCCGTC 441386 Query 110963 AGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA 111022 | || ||||| || ||||| ||||| || | |||| ||| || || || Sbjct 441387 AAGGCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGAC 441446 Query 111023 TCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 111082 ||||| | ||| | || || | || || | ||||||||||| | |||||| Sbjct 441447 TCAAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATG 441506 Query 111083 GGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATG 111142 || | || ||||| || || || || | ||||| || || ||| ||| Sbjct 441507 GGACGATGCCGCATGTTGCTGTTGCGTGCTTCTTGGACGGGGTAGTGGTTGACGTCGATG 441566 Query 111143 ACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAA 111202 | ||| |||||| | ||| | |||| || || || |||| | || | Sbjct 441567 ATCTTGTTGAGATTTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGAAGTCGTAC 441626 Query 111203 GTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCC 111262 ||| || | | ||| | || ||||| | || || | ||||| || || Sbjct 441627 TTGCCTTGGTCGTAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGACGGCA 441686 Query 111263 GTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTC 111322 ||| || | | |||||| | ||| || || || | |||||| || ||| || Sbjct 441687 ACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAATGGTT 441746 Query 111323 CCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTC 111382 ||||| ||||| ||||| |||||| ||||||| ||||||||| ||||| |||| | Sbjct 441747 CCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGGGGTTG 441806 Query 111383 CCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATC-GGCGGCTGGTACAATGG 111440 || ||||| ||||| | | ||| || | | ||| | | || || || | | | | Sbjct 441807 CCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGGGCGCGGATTGTCTTG 441866 Query 111441 CGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCG 111500 || | | || || || |||||||||| || | || |||||||| || || Sbjct 441867 CG--GCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGTAGC 441924 Query 111501 CGTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCA 111559 ||||| ||| || || || || || || || | || | ||| | ||| | ||| Sbjct 441925 AGTCGGCGAGCCCAGG-GCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCG 441983 Query 111560 ACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCC 111619 || ||||||||||| ||||| || |||||||| | ||||| || | | || | Sbjct 441984 ACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACT 442043 Query 111620 TCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGC 111679 || || | || ||||| || | |||||||| || | || ||| |||||||| ||| Sbjct 442044 TCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGC 442103 Query 111680 TCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCT 111736 || || |||| |||| | ||| ||| || |||| | || || | || Sbjct 442104 TCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCA 442163 Query 111737 GTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGA 111796 ||| ||| || || || ||||| |||| | || | || || || || || | Sbjct 442164 GTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCA 442223 Query 111797 ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTT 111856 || ||| | || | | |||| || || || ||||| || ||| || Sbjct 442224 ATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTA 442283 Query 111857 GAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGT 111914 || || | ||||| | | | | ||||| | ||||| || | ||| ||| ||||| Sbjct 442284 GAAATCATGGCGCA-AGT-CTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCA 442341 Query 111915 TGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTG 111974 || ||| |||||||| ||| | ||| || || || || ||||||||||| | Sbjct 442342 TGTCGACGAGGAAGCACGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAG 442401 Query 111975 GTGTTGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATC 112032 ||| ||||| |||| | | || |||||| || ||| || |||| ||| || Sbjct 442402 GTGAGGCGTGGGTGAAGAATTTACT--GGACATGAGGTTGTAGGTTTCCAGGACGCGCTC 442459 Query 112033 AATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCAT 112092 ||||| || || |||||||| || || ||||||| ||||| ||| || ||| | Sbjct 442460 AATGTTGTCTCCCCAGATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGAC 442519 Query 112093 GAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 | |||| || ||| | ||||| | || ||| || || |||| ||||||||| Sbjct 442520 AATCTTGCCGTCCAGCTTCAGGAGATACGATC-GCTCCAGCGTCTTGAAACCAAAGTA 442576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628028475170400