Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2 239 6e-58 seq1 95.1 1e-14 >seq2 Length=1075658 Score = 239 bits (264), Expect = 6e-58 Identities = 1165/1841 (63%), Gaps = 27/1841 (1%) Strand=Plus/Plus Query 117798 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 117857 |||| | ||||||| ||||| ||| ||| | | || | ||||||||| || ||| Sbjct 440748 TCAACGGTGAACTGGATGGGGGCCGCGGCGGCTTGCGTGCGCAAGTAGTACATGCCAGTC 440807 Query 117858 TTGAGCCCCTGCTTCCA---GGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGA 117914 ||||| ||| ||||||| |||| | ||||| || | | |||| | |||||| Sbjct 440808 TTGAGACCCAGCTTCCACCCGGCAAAG---TGCATCGACGTGATCTTGCCCATGGTTGGG 440864 Query 117915 CTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCC 117974 | |||| | ||| | | ||||| || ||||| ||| || || || || ||| Sbjct 440865 TCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCGGCC 440924 Query 117975 ATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCA 118034 || | | ||||| | | |||||||| || ||| |||| || ||| | || Sbjct 440925 ATCTGCACCACATGACGCTGCGAAATTTCCCAGACCGTCTTGTACAGAGCCTTTACCTCG 440984 Query 118035 TCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATA 118094 | || || | ||| || ||||| || || | | | ||| ||| |||||| Sbjct 440985 CCGGGAATGTTGGGGATGTTCTGGATCGAGCCGTTCTCGGCAATGATGCGATTCTTCATG 441044 Query 118095 TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAA 118152 | | |||||| ||||| || | |||||||| | || ||| | |||| || Sbjct 441045 GCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGGGT--TGACGACCT 441102 Query 118153 CAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACT 118212 ||||| ||||| ||| ||||| | | || || |||| |||||| ||||| ||||||| Sbjct 441103 GGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCTCGAAGCACT 441162 Query 118213 CATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGT 118272 | ||||| |||| || || | ||||| || ||||||||||| || | || || || Sbjct 441163 CGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCAGCAGCGAGT 441222 Query 118273 TACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTC---GTAGTTGAGCT 118329 | || | || | ||| | || | |||||||| | ||||| || ||| | | Sbjct 441223 TGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCACTCCCACAAGTCGGAC- 441281 Query 118330 TTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAA 118389 | | | | | |||||| |||||||| ||||| |||| || || || ||||||| | Sbjct 441282 --GGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGGAGATCCCTTGA 441339 Query 118390 ATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGAT 118449 | || || || ||||| ||| |||| || |||| | ||| ||||| | Sbjct 441340 ACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCGACGCCGTCAAGGCGGCGTGGT 441399 Query 118450 ACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTC 118509 | || || |||||||| | |||| | |||||| || ||||| | | | Sbjct 441400 AGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTCAAAGGGCATGC 441459 Query 118510 GGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCA 118569 | | || || | || || | ||||| ||||||| ||||| || ||||| | || Sbjct 441460 GAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATGGGACGATGCCGCA 441519 Query 118570 TATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGAT 118629 | || || || || | ||||| || || ||||| | | | || |||| Sbjct 441520 TGTTGCTGTTGCGTGCTTCTTGGACGGGGTAGTGGTTGACGTCGATGATCTTGTTGAGAT 441579 Query 118630 TTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTT 118689 || | || || |||| || || ||||||| | | || | ||| || | Sbjct 441580 TTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGAAGTCGTACTTGCCTTGGTCGT 441639 Query 118690 CATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTAT 118749 | ||| | || ||||| | || || || || || || | ||| || Sbjct 441640 AGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGGG 441699 Query 118750 CAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTT 118809 | | |||||| ||||| || ||||| | ||| || || |||||| ||||||||||| | Sbjct 441700 CCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAATGGTTCCCAAGTTCTTCT 441759 Query 118810 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 118869 | || ||| |||| || ||||||||| ||||| | || | || ||||| || | Sbjct 441760 GGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGGTCT 441819 Query 118870 GGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCC 118928 | | || ||| || | | ||| | | || | || | | || | | | || || Sbjct 441820 GAGCCTCGAGGATCGAGTACCACAGCTTCTG-GGCGCGGATTGTCTTGCGGCCACGGCCT 441878 Query 118929 TCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCT 118988 || |||||||||| || | || |||||||| || || | || | |||||| Sbjct 441879 TCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGTAGCAGTCGGCGAGCCCA 441938 Query 118989 GGTGCCTT-ATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 119047 || || || | ||||| | ||| | ||| | ||| || ||| || ||||||||||| Sbjct 441939 GG-GCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATGAA 441997 Query 119048 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 119107 |||||| |||||||| ||||| |||||| || ||| ||| |||| || | || || Sbjct 441998 GAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCGTG 442057 Query 119108 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 119167 || | | || | || || | || ||| |||||||| || |||||||| | || Sbjct 442058 GTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATGGC 442117 Query 119168 GATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATAC 119224 || | ||| || || | |||| || || || |||||| ||| || || Sbjct 442118 GAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAGAC 442177 Query 119225 ACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATT 119284 || ||||| |||| || || | || ||| || || || ||| || | Sbjct 442178 TCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCGGT 442237 Query 119285 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 119344 || | | ||||| || || || ||||| || ||| || || || ||||| Sbjct 442238 AGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCGCA 442297 Query 119345 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 119404 | ||||| || ||||||| || ||||| ||| |||| | ||| ||||||||| Sbjct 442298 AGTCTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAGCA 442357 Query 119405 GCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA 119464 || | ||| | || || || ||||||||||| || |||| |||||| |||| Sbjct 442358 CGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTGAA 442417 Query 119465 CA--TACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGA 119522 | | || |||||| || |||||| |||| |||| ||||| || || Sbjct 442418 GAATTTACT--GGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGTTGTCTCCCCAG 442475 Query 119523 ATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGC 119582 || |||| | || ||||| | ||||| || ||| ||| | | | || || ||| Sbjct 442476 ATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCGTCCAGC 442535 Query 119583 CTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 119623 || |||| || ||||| ||||||| |||||| || Sbjct 442536 TTCAGGAGATACGATCGCTCCAGCGTCTTGAAACCAAAGTA 442576 >seq1 Length=2302571 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | ||||||||||||||| |||||||| || |||||| || || Sbjct 1624962 GCAAAGTCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGTAAGCCCG 1624903 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 |||||||| || |||||||| | ||| || || | |||| ||| ||||||||| Sbjct 1624902 GGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAATGCACCACTGAAGAAGATG 1624843 Query 130136 CCCTCCACACACGCGAACGCAA 130157 ||||| ||| ||||| |||| Sbjct 1624842 CCCTCGACAGCGGCGAAGGCAA 1624821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618431729032440