Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2 187 3e-42 seq36 93.3 5e-14 seq1 93.3 5e-14 >seq2 Length=1075658 Score = 187 bits (206), Expect = 3e-42 Identities = 1011/1587 (64%), Gaps = 43/1587 (3%) Strand=Plus/Minus Query 104136 AGAGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAA 104194 ||||||||| | ||| | || |||||| |||| || || ||| || | ||||| | Sbjct 442596 AGAGAGACTTCAACTATCAGTACTTTGGTTTCAAGACGCTGGAGC-GATCGTATCTCCTG 442538 Query 104195 CGGCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGT 104254 ||| || || | | ||| || ||| ||||| ||||||| || || |||| Sbjct 442537 AAGCTGGACGGCAAGATTGTCGAACGACCTCAGCACATGATCATGCGTGTTGCTGTCGGC 442478 Query 104255 ATTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTA-- 104312 || || || ||||||| ||| |||| || ||| || |||||| || | Sbjct 442477 ATCTGGGGAGACAACATTGAGCGCGTCCTGGAAACCTACAACCTCATGTCC--AGTAAAT 442420 Query 104313 TGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCA 104372 | |||| ||||| |||| ||||||||||| || || || || || | ||| Sbjct 442419 TCTTCACCCACGCCTCACCTACCCTCTTCAACGCGGGCACGCCTCAGTGTCAGCTTTCCT 442360 Query 104373 GTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGG 104432 |||||||| ||| || ||||| ||| ||| | || ||||| | ||||| | | Sbjct 442359 CGTGCTTCCTCGTCGACATGAAGGAAGACAGCATCGAGGGCATCTACGACACTCTCAAG- 442301 Query 104433 AGTGTGCGCAA--ATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAG 104490 | | ||||| | || || || ||| || ||||| || || || |||| | | Sbjct 442300 ACT-TGCGCCATGATTTCTAAAATGGCCGGCGGTATCGGCCTGAACGTCCACCGCATTCG 442242 Query 104491 AGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCT 104550 || | ||| ||| || || || || || | || | |||| ||||| Sbjct 442241 TGCTACCGGATCCTACATTGCCGGCACCAACGGCACCTCGAACGGCGTCGTTCCCATGCT 442182 Query 104551 TCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATC 104607 || || || ||| ||| || | || || | |||| || ||| ||| | Sbjct 442181 GCGAGTCTTCAACAACACTGCCAGATACGTCGACCAAGGCGGCAACAAGCGACCGGGCGC 442122 Query 104608 TATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCT 104667 |||| |||| || ||||| |||||||| ||| || | || |||||||| | | Sbjct 442121 CTTCGCCATCTACCTGGAGCCCTGGCACGCCGATGTCTTTGAATTCCTTGATCTCAGAAA 442062 Query 104668 CAACCAAGGTGACGAGGAGG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCA 104725 ||||| || | ||||| | |||| | ||||| |||||| || || ||||| || Sbjct 442061 GAACCACGGCAAGGAGGAAGTCCGCGCT--CGCGACCTCTTCCTTGCGCTGTGGATCCCC 442004 Query 104726 GATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AA 104784 || |||||||||||| | || ||| ||| |||| | ||| | ||| | || || || || Sbjct 442003 GACCTCTTCATGAAGCGTGTCGAGAAGAATGGCGACTGGACCCTCATGTGCCCCAACGAA 441944 Query 104785 GGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGA 104844 || ||||| ||| |||| | || || |||||||| || | || ||||||||| Sbjct 441943 TGC-CCTGGGCTCGCCGACTGCTACGGCGACGAGTTTGAGGCTTTGTATGAAAAGTACGA 441885 Query 104845 GGAAGAAGGTCG-GGCGACTGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTC 104902 | ||||| || ||| | ||| | | || | || | ||||| | | || ||| Sbjct 441884 GCGCGAAGGCCGTGGCCGCAA-GACAATCCGCGCC-CAGAAGCTGTGGTACTCGATCCTC 441827 Query 104903 AAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAG 104962 || |||| ||||||||||| | || | ||||| ||||| || || ||| ||| Sbjct 441826 GAGGCTCAGACCGAGACTGGCAACCCCTTTATGCTGTACAAGGATCATTGCAACAGGAAG 441767 Query 104963 AGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAA 105022 || || || ||||| ||||| || || ||||| ||||| || || || | || Sbjct 441766 AGCAACCAGAAGAACTTGGGAACCATTCGCAGCTCCAACCTCTGCACCGAGATTATCGAG 441707 Query 105023 TTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTAT 105082 | | | | || ||| || || || ||||| || || | || || ||| | | Sbjct 441706 TACTCGGCCCCCGACGAGGTTGCCGTCTGCAACCTTGCCTCCCTTGCCCTGCCCGCCTTT 441647 Query 105083 GTGGATCCAGAGACAAAGACATTT--GATTATGAAAAACTCCACGAAGTTACGAAAACTG 105140 ||||| | ||| ||| || | || | |||| || ||||| || || | Sbjct 441646 GTGGA--CTACGACCAAGGCAAGTACGACTTCCAAAAGCTGCACGACGTCACCCGCGTGG 441589 Query 105141 TCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTA 105200 | | ||| || |||| | || || || |||||||| | || || | Sbjct 441588 TTGTCCGAAATCTCAACAAGATCATCGACGTCAACCACTACCCCGTCCAAGAAGCACGCA 441529 Query 105201 AATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCA 105260 | || ||| | || ||||| |||||| |||||||||| || | || || | ||| Sbjct 441528 ACAGCAACATGCGGCATCGTCCCATTGGTGTCGGTGTTCAAGGCTTGGCCGACGCCTTCC 441469 Query 105261 TTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTG 105320 || |||| | ||||| || ||| || || | || || || |||| Sbjct 441468 TTGCGCTTCGCATGCCCTTTGAGTCTCCCGAGGCTCGCGAGCTGAACAAGCAGATTTTTG 441409 Query 105321 AGACCATGTATCACGCCGCTCTTGA-GGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCA 105379 ||||||| || |||||||| ||||| |||| ||| |||| ||| || ||||| Sbjct 441408 AGACCATCTACCACGCCGC-CTTGACGGCGTCGGTGGAGCTGGCCAAGGAGGAGGGTCCC 441350 Query 105380 TATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAA 105439 || || || |||| ||||| || || |||| | || || ||||| |||| |||| Sbjct 441349 TACTCCACGTTCAAGGGATCTCCGGCCTCTGAAGGCATCCTGCAGTTTGACATGT-GGAA 441291 Query 105440 GGTGA----GACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAA 105495 |||| | || | ||| | || ||||| | |||||||| | ||||||||| | Sbjct 441290 CGTGACGCCGTCCGA-CTT--GTGGGAGTGGGATTCCCTCAAGGAGCAGATCAAGGAGCA 441234 Query 105496 GGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTT 105555 || |||| ||| || || | || || ||||| || || ||||| | || || | Sbjct 441233 CGGGATTCGCAACTCGCTGCTGCTCGCGCCCATGCCCACGGCGTCCACGTCGCAGATTCT 441174 Query 105556 GGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGC 105615 ||| || || || ||||| || ||||||||| | ||||| || | | || | ||| || Sbjct 441173 GGGCAACAACGAGTGCTTCGAGCCCTACACGTCCAACATTTACCAGCGACGCGTCCTGGC 441114 Query 105616 GGGAGAGTTTGTGATTGTCAAC---AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCT 105672 ||| ||||| | | |||||| || |||| |||| ||| || || ||||| Sbjct 441113 GGGCGAGTTCCAGGTCGTCAACCCATGGCTTCTCAAGGAT---CTCGTCGACATGGGTCT 441057 Query 105673 CTGGTCCAAGGATATGAAGGATCTCAT 105699 ||||| | | |||||| ||| ||| Sbjct 441056 GTGGTCAGACGCCATGAAGAATCGCAT 441030 >seq36 Length=363581 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 ||| || || || || ||||||| ||||||||| ||||| ||| | | |||| || Sbjct 175965 GGCGTCGATTTCGTCGATGAAGATGATGCATGGAGCATTTTTGCGGCCCTCGGCAAACAG 176024 Query 9763 ATCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA- 9819 || | || | ||| || || ||||| |||||||| ||||| || | || || Sbjct 176025 GTCTCTGACTC--TTGACGGACCAACACCGACAAACATTTCCACGAATTCTGATCCGCTC 176082 Query 9820 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 || || | ||| || || || || || ||| ||||| |||||||| ||||| || Sbjct 176083 ACGCTGAA-GAACGGTACGCCGGACTCGCCAGCAGTGGCTTTTGCGAGAAGCGTCTTTCC 176141 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 |||||||| ||| ||||||| ||| || || || ||||||||||| Sbjct 176142 AGTACCTGGAGGACCAGCGAGGATGGCGCCGCGGGGTATCTTGGCGCC 176189 >seq1 Length=2302571 Score = 93.3 bits (102), Expect = 5e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAG 94885 ||| ||||| ||||||||| |||| | ||| ||| | || | ||||||||||||||| | Sbjct 1624834 TGTCGAGGGCATCTTCTTCAGTGGTGCATTC-GCGTCCATCTTTTGGCTCAAGAAGCGCG 1624892 Query 94886 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACC 94945 | |||||||| || || |||||| ||||| || || || ||||||||||| | ||| Sbjct 1624893 GCCTCATGCCCGGGCTTACCTTCTCAAACGAACTCATATCCCGTGACGAGGGTTTGCACA 1624952 Query 94946 AAGAGTTTGC 94955 || ||||| Sbjct 1624953 CCGACTTTGC 1624962 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/122 (75%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497 ||||| || |||||| |||| || || ||||||||| |||| ||||| | || | || Sbjct 1624379 TGGACAGCCGAAGAGATAGACCTGTCCAAGGATTTGCACGACTGGAATAATCGCCTGAAC 1624438 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 || |||||||| | ||||| ||||| ||||||||||||||| || ||||| || Sbjct 1624439 GACGATGAAAAGTATTTCATTTCTCACATCTTGGCATTCTTTGCTGCCTCGGATGGCATC 1624498 Query 94558 GT 94559 || Sbjct 1624499 GT 1624500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583257526448760