Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq2 187 3e-42
seq36 93.3 5e-14
seq1 93.3 5e-14
>seq2
Length=1075658
Score = 187 bits (206), Expect = 3e-42
Identities = 1011/1587 (64%), Gaps = 43/1587 (3%)
Strand=Plus/Minus
Query 104136 AGAGAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAA 104194
||||||||| | ||| | || |||||| |||| || || ||| || | ||||| |
Sbjct 442596 AGAGAGACTTCAACTATCAGTACTTTGGTTTCAAGACGCTGGAGC-GATCGTATCTCCTG 442538
Query 104195 CGGCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGT 104254
||| || || | | ||| || ||| ||||| ||||||| || || ||||
Sbjct 442537 AAGCTGGACGGCAAGATTGTCGAACGACCTCAGCACATGATCATGCGTGTTGCTGTCGGC 442478
Query 104255 ATTCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTA-- 104312
|| || || ||||||| ||| |||| || ||| || |||||| || |
Sbjct 442477 ATCTGGGGAGACAACATTGAGCGCGTCCTGGAAACCTACAACCTCATGTCC--AGTAAAT 442420
Query 104313 TGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCA 104372
| |||| ||||| |||| ||||||||||| || || || || || | |||
Sbjct 442419 TCTTCACCCACGCCTCACCTACCCTCTTCAACGCGGGCACGCCTCAGTGTCAGCTTTCCT 442360
Query 104373 GTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGG 104432
|||||||| ||| || ||||| ||| ||| | || ||||| | ||||| | |
Sbjct 442359 CGTGCTTCCTCGTCGACATGAAGGAAGACAGCATCGAGGGCATCTACGACACTCTCAAG- 442301
Query 104433 AGTGTGCGCAA--ATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAG 104490
| | ||||| | || || || ||| || ||||| || || || |||| | |
Sbjct 442300 ACT-TGCGCCATGATTTCTAAAATGGCCGGCGGTATCGGCCTGAACGTCCACCGCATTCG 442242
Query 104491 AGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCT 104550
|| | ||| ||| || || || || || | || | |||| |||||
Sbjct 442241 TGCTACCGGATCCTACATTGCCGGCACCAACGGCACCTCGAACGGCGTCGTTCCCATGCT 442182
Query 104551 TCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGT---CGAAAGGGATC 104607
|| || || ||| ||| || | || || | |||| || ||| ||| |
Sbjct 442181 GCGAGTCTTCAACAACACTGCCAGATACGTCGACCAAGGCGGCAACAAGCGACCGGGCGC 442122
Query 104608 TATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCT 104667
|||| |||| || ||||| |||||||| ||| || | || |||||||| | |
Sbjct 442121 CTTCGCCATCTACCTGGAGCCCTGGCACGCCGATGTCTTTGAATTCCTTGATCTCAGAAA 442062
Query 104668 CAACCAAGGTGACGAGGAGG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCA 104725
||||| || | ||||| | |||| | ||||| |||||| || || ||||| ||
Sbjct 442061 GAACCACGGCAAGGAGGAAGTCCGCGCT--CGCGACCTCTTCCTTGCGCTGTGGATCCCC 442004
Query 104726 GATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AA 104784
|| |||||||||||| | || ||| ||| |||| | ||| | ||| | || || || ||
Sbjct 442003 GACCTCTTCATGAAGCGTGTCGAGAAGAATGGCGACTGGACCCTCATGTGCCCCAACGAA 441944
Query 104785 GGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGA 104844
|| ||||| ||| |||| | || || |||||||| || | || |||||||||
Sbjct 441943 TGC-CCTGGGCTCGCCGACTGCTACGGCGACGAGTTTGAGGCTTTGTATGAAAAGTACGA 441885
Query 104845 GGAAGAAGGTCG-GGCGACTGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTC 104902
| ||||| || ||| | ||| | | || | || | ||||| | | || |||
Sbjct 441884 GCGCGAAGGCCGTGGCCGCAA-GACAATCCGCGCC-CAGAAGCTGTGGTACTCGATCCTC 441827
Query 104903 AAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAG 104962
|| |||| ||||||||||| | || | ||||| ||||| || || ||| |||
Sbjct 441826 GAGGCTCAGACCGAGACTGGCAACCCCTTTATGCTGTACAAGGATCATTGCAACAGGAAG 441767
Query 104963 AGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAA 105022
|| || || ||||| ||||| || || ||||| ||||| || || || | ||
Sbjct 441766 AGCAACCAGAAGAACTTGGGAACCATTCGCAGCTCCAACCTCTGCACCGAGATTATCGAG 441707
Query 105023 TTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTAT 105082
| | | | || ||| || || || ||||| || || | || || ||| | |
Sbjct 441706 TACTCGGCCCCCGACGAGGTTGCCGTCTGCAACCTTGCCTCCCTTGCCCTGCCCGCCTTT 441647
Query 105083 GTGGATCCAGAGACAAAGACATTT--GATTATGAAAAACTCCACGAAGTTACGAAAACTG 105140
||||| | ||| ||| || | || | |||| || ||||| || || |
Sbjct 441646 GTGGA--CTACGACCAAGGCAAGTACGACTTCCAAAAGCTGCACGACGTCACCCGCGTGG 441589
Query 105141 TCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTA 105200
| | ||| || |||| | || || || |||||||| | || || |
Sbjct 441588 TTGTCCGAAATCTCAACAAGATCATCGACGTCAACCACTACCCCGTCCAAGAAGCACGCA 441529
Query 105201 AATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCA 105260
| || ||| | || ||||| |||||| |||||||||| || | || || | |||
Sbjct 441528 ACAGCAACATGCGGCATCGTCCCATTGGTGTCGGTGTTCAAGGCTTGGCCGACGCCTTCC 441469
Query 105261 TTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTG 105320
|| |||| | ||||| || ||| || || | || || || ||||
Sbjct 441468 TTGCGCTTCGCATGCCCTTTGAGTCTCCCGAGGCTCGCGAGCTGAACAAGCAGATTTTTG 441409
Query 105321 AGACCATGTATCACGCCGCTCTTGA-GGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCA 105379
||||||| || |||||||| ||||| |||| ||| |||| ||| || |||||
Sbjct 441408 AGACCATCTACCACGCCGC-CTTGACGGCGTCGGTGGAGCTGGCCAAGGAGGAGGGTCCC 441350
Query 105380 TATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAA 105439
|| || || |||| ||||| || || |||| | || || ||||| |||| ||||
Sbjct 441349 TACTCCACGTTCAAGGGATCTCCGGCCTCTGAAGGCATCCTGCAGTTTGACATGT-GGAA 441291
Query 105440 GGTGA----GACCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAA 105495
|||| | || | ||| | || ||||| | |||||||| | ||||||||| |
Sbjct 441290 CGTGACGCCGTCCGA-CTT--GTGGGAGTGGGATTCCCTCAAGGAGCAGATCAAGGAGCA 441234
Query 105496 GGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTT 105555
|| |||| ||| || || | || || ||||| || || ||||| | || || |
Sbjct 441233 CGGGATTCGCAACTCGCTGCTGCTCGCGCCCATGCCCACGGCGTCCACGTCGCAGATTCT 441174
Query 105556 GGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGC 105615
||| || || || ||||| || ||||||||| | ||||| || | | || | ||| ||
Sbjct 441173 GGGCAACAACGAGTGCTTCGAGCCCTACACGTCCAACATTTACCAGCGACGCGTCCTGGC 441114
Query 105616 GGGAGAGTTTGTGATTGTCAAC---AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCT 105672
||| ||||| | | |||||| || |||| |||| ||| || || |||||
Sbjct 441113 GGGCGAGTTCCAGGTCGTCAACCCATGGCTTCTCAAGGAT---CTCGTCGACATGGGTCT 441057
Query 105673 CTGGTCCAAGGATATGAAGGATCTCAT 105699
||||| | | |||||| ||| |||
Sbjct 441056 GTGGTCAGACGCCATGAAGAATCGCAT 441030
>seq36
Length=363581
Score = 93.3 bits (102), Expect = 5e-14
Identities = 160/228 (70%), Gaps = 6/228 (3%)
Strand=Plus/Plus
Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762
||| || || || || ||||||| ||||||||| ||||| ||| | | |||| ||
Sbjct 175965 GGCGTCGATTTCGTCGATGAAGATGATGCATGGAGCATTTTTGCGGCCCTCGGCAAACAG 176024
Query 9763 ATCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA- 9819
|| | || | ||| || || ||||| |||||||| ||||| || | || ||
Sbjct 176025 GTCTCTGACTC--TTGACGGACCAACACCGACAAACATTTCCACGAATTCTGATCCGCTC 176082
Query 9820 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879
|| || | ||| || || || || || ||| ||||| |||||||| ||||| ||
Sbjct 176083 ACGCTGAA-GAACGGTACGCCGGACTCGCCAGCAGTGGCTTTTGCGAGAAGCGTCTTTCC 176141
Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927
|||||||| ||| ||||||| ||| || || || |||||||||||
Sbjct 176142 AGTACCTGGAGGACCAGCGAGGATGGCGCCGCGGGGTATCTTGGCGCC 176189
>seq1
Length=2302571
Score = 93.3 bits (102), Expect = 5e-14
Identities = 100/130 (77%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAG 94885
||| ||||| ||||||||| |||| | ||| ||| | || | ||||||||||||||| |
Sbjct 1624834 TGTCGAGGGCATCTTCTTCAGTGGTGCATTC-GCGTCCATCTTTTGGCTCAAGAAGCGCG 1624892
Query 94886 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACC 94945
| |||||||| || || |||||| ||||| || || || ||||||||||| | |||
Sbjct 1624893 GCCTCATGCCCGGGCTTACCTTCTCAAACGAACTCATATCCCGTGACGAGGGTTTGCACA 1624952
Query 94946 AAGAGTTTGC 94955
|| |||||
Sbjct 1624953 CCGACTTTGC 1624962
Score = 84.2 bits (92), Expect = 3e-11
Identities = 92/122 (75%), Gaps = 3/122 (2%)
Strand=Plus/Plus
Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 94497
||||| || |||||| |||| || || ||||||||| |||| ||||| | || | ||
Sbjct 1624379 TGGACAGCCGAAGAGATAGACCTGTCCAAGGATTTGCACGACTGGAATAATCGCCTGAAC 1624438
Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557
|| |||||||| | ||||| ||||| ||||||||||||||| || ||||| ||
Sbjct 1624439 GACGATGAAAAGTATTTCATTTCTCACATCTTGGCATTCTTTGCTGCCTCGGATGGCATC 1624498
Query 94558 GT 94559
||
Sbjct 1624499 GT 1624500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583257526448760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |