Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2 500 9e-137 >seq2 Length=1075658 Score = 500 bits (554), Expect = 9e-137 Identities = 1166/1742 (67%), Gaps = 45/1742 (3%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || ||||| ||||||||||| |||||||||||| |||||| ||| | |||||| | Sbjct 440784 GTGCGCAAGTAGTACATGCCAGTCTTGAGACCCAGCTTCCACCCGGCAAAGTGCATCGAC 440843 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | |||| ||| | |||| || |||| |||||||| ||||||||||||||||| Sbjct 440844 GTGATCTTGCCCATGGTTGGGTCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATA 440903 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACC-GACTTTTGCGGAATCTCCCAGATGGT 78368 | |||||||||||||| ||||| | | || ||| | ||| ||| ||||||| || Sbjct 440904 AAGGCACCGCGGTCGGCGGCCATCTGCACCACATGACGCT-GCGAAATTTCCCAGACCGT 440962 Query 78369 CCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTAC--GCTCCCACCGG-C 78425 | ||| | ||||| | ||| | | |||| | | ||| | | || ||| | Sbjct 440963 CTTGTACAGAGCCTTTACCTCGCCGGGAATGTT--GGGGATGTTCTGGATCGAGCCGTTC 441020 Query 78426 TCGCACAAT--TTC-ATTCTTAATTTGAGGGTT-CCAGCGATTGATCTTCTGAAGATCCC 78481 ||| |||| | | |||||| || | | | ||| || || | |||||| Sbjct 441021 TCGG-CAATGATGCGATTCTTCATG-GCGTCTGACCACAGACCCATGTCGACGAGATCCT 441078 Query 78482 GGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGT 78541 || || |||| | | ||||||||| |||||| || ||| |||| |||| Sbjct 441079 TGAGAAGCCATGGGTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGT 441138 Query 78542 TGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCG 78601 ||| |||||| |||||||| ||||||||| |||| ||||| | || || || || | Sbjct 441139 TGGACGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGG 441198 Query 78602 GCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAGG- 78660 ||||||| |||| ||| || || || |||| || ||| |||||||| |||| ||| Sbjct 441199 GCATGGGCGCGAGCAGCAGCGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGG 441258 Query 78661 -----CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCT 78715 | ||||| || || || || | ||||||||| || ||||| || | Sbjct 441259 AATCCCACTCCCACAAGTCGGACGGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTT 441318 Query 78716 CGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATG 78775 | || ||||| || ||||||||||| ||| | |||||||||||||| || || | Sbjct 441319 CAGAGGCCGGAGATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCG 441378 Query 78776 ACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCT 78835 || | || ||| |||||||| | | ||| || || |||||| |||||||| |||| Sbjct 441379 ACGCCGTCAAGGCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCT 441438 Query 78836 TGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGA 78895 || || || | | || ||| | |||| | ||||||| ||| || || |||| Sbjct 441439 CGGGAGACTCAAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGA 441498 Query 78896 TAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCC 78955 | | || || || || ||||||||||| || || || | | | ||||| ||| Sbjct 441499 CACCAATGGGACGATGCCGCATGTTGCTGTTGCGTGCTTCTTGGACGGGGTAGTGGTTGA 441558 Query 78956 GATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGA 79015 ||||||| ||| || || || || || || || || |||| || || || Sbjct 441559 CGTCGATGATCTTGTTGAGATTTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGA 441618 Query 79016 AATCAAAATGATTTCCTTTGATG--------AAAGTCGGT-AGGCACAGCGATGCCAGGT 79066 | || | | | |||| | | |||| ||| ||| || || || |||| Sbjct 441619 AGTCGTACT---TGCCTTGGTCGTAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGT 441675 Query 79067 TGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGA-- 79124 |||| ||||| |||||| ||| || |||||| || || ||||| | || || Sbjct 441676 TGCAGACGGCAACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGC 441735 Query 79125 --CGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAG 79182 ||| ||||| || | ||||||||||||||||||| ||| || |||||||| Sbjct 441736 TGCGA----ATGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTAC 441791 Query 79183 CACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGG 79242 ||| | || | || ||||| |||| || ||| | || ||| | | | || Sbjct 441792 AGCATAAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGG 441851 Query 79243 GCCCGGACAACCTTCTTGTACCGAC--CCTGTGCGA-CGTACGTCCGGTACAACTCGTTG 79299 || |||| ||||| | || ||| ||| ||||| | ||||| | | Sbjct 441852 GCGCGGATTG---TCTTGCGGCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCA 441908 Query 79300 AAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAG 79359 || | || || ||| |||| || || ||||| |||| |||||||| ||| |||| Sbjct 441909 AACTCGTCGCCGTAGCAGTCGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGGGTCCAG 441968 Query 79360 TCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGG 79419 || | | |||||| || || |||||||||||| ||||||||||| || ||||||| Sbjct 441969 TCGCCATTCTTCTCGACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGG 442028 Query 79420 TCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATG 79479 ||||| || | ||||| | ||| |||||| | || || || || || | || Sbjct 442029 TCGCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACA 442088 Query 79480 TCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGG 79539 ||||||||||| |||||||| ||||||||||| | ||| |||||| |||||| ||| Sbjct 442089 TCGGCGTGCCAGGGCTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGG 442148 Query 79540 TTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACG 79599 | |||||| | ||| ||||||||||| ||||| |||||||| |||| ||||| | | | Sbjct 442149 TCGACGTATCTGGCAGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGTG 442208 Query 79600 CCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATG 79659 ||||| || ||| || | ||| | || |||||| | || | ||||| Sbjct 442209 CCGTTGGTGCCGGCAATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGATA 442268 Query 79660 CCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATC 79719 || |||| | || || || ||||| |||||| || ||||||||||||||||| Sbjct 442269 CCGCCGGCCATTTTAGAAATCATGGCGCAAGTCTTGAGAGTGTCGTAGATGCCCTCGATG 442328 Query 79720 GAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCG 79779 ||| |||||||| |||| |||||||| || | ||| | ||| || ||| Sbjct 442329 CTGTCTTCCTTCATGTCGACGAGGAAGCACGAGGAAAGCTGACACTGAGGCGTGCCCGCG 442388 Query 79780 TTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCC 79839 ||||||||||| || | ||||| |||||||| || | ||| || | ||| || ||| Sbjct 442389 TTGAAGAGGGTAGGTGAGGCGTGGGTGAAGAATTTACTGGACATGAGGTTGTAGGTTTCC 442448 Query 79840 TTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGG 79899 ||||||| | || ||| || ||||||||| || || ||||||| | || ||| Sbjct 442449 AGGACGCGCTCAATGTTGTCTCCCCAGATGCCGACAGCAACACGCATGATCATGTGCTGA 442508 Query 79900 GG 79901 || Sbjct 442509 GG 442510 Score = 443 bits (490), Expect = 2e-119 Identities = 1171/1761 (66%), Gaps = 69/1761 (4%) Strand=Plus/Minus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 |||||| || | ||||||| || || ||||||||| || ||| || | ||| ||| Sbjct 442510 CCTCAGCACATGATCATGCGTGTTGCTGTCGGCATCTGGGGAGACAACATTGAGCGCGTC 442451 Query 19163 CGCGAGACATACGACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGACCCTTTT 19221 | || || ||| |||| ||| |||| || |||||||| ||||| | || ||||| || Sbjct 442450 CTGGAAACCTACAACCTCATGT-CCAGTAAATTCTTCACCCACGCCTCACCTACCCTCTT 442392 Query 19222 CAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGA 19281 |||||| || ||| | ||| | || || ||||| || | |||||||| || Sbjct 442391 CAACGCGGGCACGCCTCAGTGTCAGCTTTCCTCGTGCTTCCTCGTCGACATGAAGGAAGA 442332 Query 19282 CAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGG 19341 |||||| |||||||||||||| || |||||| ||||| || || || | |||| Sbjct 442331 CAGCATCGAGGGCATCTACGACACTCTCAAGACTTGCGCCATGATTTCTAAAATGGCCGG 442272 Query 19342 GGGTATCGG---GA---TCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGG 19395 |||||||| || ||||| || || || | | || | || || Sbjct 442271 CGGTATCGGCCTGAACGTCCACCGC------ATTCGTGCTACCGGATCCTACATTGCCGG 442218 Query 19396 GACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAG 19455 || ||||| | |||| |||| || ||||| || |||||||||||||| ||||| Sbjct 442217 CACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAGTCTTCAACAACACTGCCAG 442158 Query 19456 GTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATG 19515 |||||| |||| || ||| ||| || |||| | |||||||||||||| ||||| || Sbjct 442157 ATACGTCGACCAAGGCGGCAACAAGCGACCGGGCGCCTTCGCCATCTACCTGGAGCCCTG 442098 Query 19516 GCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCG 19575 |||||| || ||| | || ||||| || || | |||||| || | ||||| | || Sbjct 442097 GCACGCCGATGTCTTTGAATTCCTTGATCTCAGAAAGAACCACGGCAAGGAGGAAGTCCG 442038 Query 19576 CTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAA 19635 | ||||||||||||| || ||||||| || ||||| |||||| || || ||||| Sbjct 442037 CGCTCGCGACCTCTTCCTTGCGCTGTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGAA 441978 Query 19636 GGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGG 19695 | | | || ||| ||| |||||||| ||||||||||||| || ||||| |||||| Sbjct 441977 GAATGGCGACTGGACCCTCATGTGCCCCAACGAATGCCCTGGGCTCGCCGACTGCTACGG 441918 Query 19696 CGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGC-CCAGGGCCGGTTCAAGAAGGTGG 19754 ||| | ||| | | ||||| | |||| ||| | | ||||| | ||| Sbjct 441917 CGACGAGTTTGAGGCTTTGTATGAAAAGTACG-AGCGCGAAGGCCGTGGCCGCAAGACAA 441859 Query 19755 TCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGT 19814 |||| |||| | | | ||| || ||||| | ||| |||||| |||| || | Sbjct 441858 TCCGCGCCCAGAAGCTGTGGTACTCGATCCTCGAGGCTCAGACCGAGACTGGCAACCCCT 441799 Query 19815 ACATGTGCTACAAGGA-CGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATC 19873 ||| |||||||| | || ||| ||| || ||||||||| | | || | Sbjct 441798 TTATGCTGTACAAGGATCATTGC-AACAGGAAGAGCAACCAGAAGAACTT----GGGAAC 441744 Query 19874 AAGTCG----TCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGC 19929 | ||| |||||||| || || || || || ||| || || |||||| ||| Sbjct 441743 CATTCGCAGCTCCAACCTCTGCACCGAGATTATCGAGTACTCGGCCCCCGACGAGGTTGC 441684 Query 19930 CGTGTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCCTCCTCC-------- 19981 ||| || || || || ||||| |||||| | || || || || | | Sbjct 441683 CGTCTGCAACCTTGCCTCCCTTGCCCTGCCCGCCTTTGT---GGACTACGACCAAGGCAA 441627 Query 19982 -TTCGACTTTGCCAAA--TTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGC 20038 | |||||| ||||| || |||| || ||||| || || || ||||| || Sbjct 441626 GTACGACTT--CCAAAAGCTGCACGACGTCACCCGCGTGGTTGTCCGAAATCTCAACAAG 441569 Query 20039 GTCATCGATCGGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGG 20098 ||||||| ||| ||||| | | | || ||||| || ||||| || || Sbjct 441568 ATCATCGACGTCAACCACTACCCCGTCCAAGAAGCACGCAACAGCAACATGCGGCATCGT 441509 Query 20099 CCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTC 20158 || || | |||| || || ||| ||||||||| ||| | ||| || | | || Sbjct 441508 CCCATTGGTGTCGGTGTTCAAGGCTTGGCCGACGCCTTCCTTGCGCTTCGCATGCCCTTT 441449 Query 20159 GACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCC 20218 || |||| |||| |||||||| |||||| || || ||| || | |||||||| ||| Sbjct 441448 GAGTCTCCCGAGGCTCGCGAGCTGAACAAGCAGATTTTTGAGACCATCTACCACGCCGCC 441389 Query 20219 CTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCG 20278 | || ||| || || ||||| ||||| || || ||| ||||||||||| || Sbjct 441388 TTGACGGCGTCGGTGGAGCTGGCCAAGGAGGAGGGTCCCTACTCCACGTTCAAGGGATCT 441329 Query 20279 CCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTT-TTG 20337 || || || || || ||||| ||| ||||||||| ||| || | || || | | Sbjct 441328 CCGGCCTCTGAAGGCATCCTGCAGTTTGACATGTGGAACGTGACGCCGTCCGACTTGTGG 441269 Query 20338 GAGCG-----CCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTC 20392 ||| | ||||||||| |||||||| |||||| ||||||||||| |||| || Sbjct 441268 GAGTGGGATTCCCTCAAGGAGCAGATCAAGGAGCACGGGATTCGCAACTCGCTGCTGCTC 441209 Query 20393 GCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCG 20452 ||||||||||| || || || || | ||||| |||| ||||||||| |||||||| Sbjct 441208 GCGCCCATGCCCACGGCGTCCACGTCGCAGATTCTGGGCAACAACGAGTGCTTCGAGCCC 441149 Query 20453 TACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAG 20512 |||||| ||||||| ||| ||| || ||||| || |||||| || ||| ||| Sbjct 441148 TACACGTCCAACATTTACCAGCGACGCGTCCTGGCGGGCGAGTTC--CA-GGTCGTCAA- 441093 Query 20513 CACCTGG-TCCGCGA----CTTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAAT- 20566 | | ||| | | | | || | | | || | | ||||||| | || |||||| Sbjct 441092 CCCATGGCTTCTCAAGGATCTCGTCG-ACATGGGTCTGTGGTCAGACGCCATGAAGAATC 441034 Query 20567 GAA--ATTGTCCGAG-CCGGCGGGAGCGTCCAG-GCAT--TGGATATCCCCCAGAACCTC 20620 | | |||| ||||| |||| || ||||| ||| | || ||| | | Sbjct 441033 GCATCATTG-CCGAGAACGGCTCGA---TCCAGAACATCCCCAACATTCCCGGCGAGGTA 440978 Query 20621 AAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCC 20680 |||| | |||| ||| || |||||||| | ||| | | | ||||| ||| Sbjct 440977 AAGGCTCTGTACAAGACGGTCTGGGAAATTTCGCAGCGTCATGTGGTGCAGATGGCCGCC 440918 Query 20681 GATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGC 20740 || ||||| |||| ||||||||||||||||| ||||| | |||| || | || | | Sbjct 440917 GACCGCGGTGCCTTTATCGACCAGTCCCAGTCTCTCAACATTCACATGAAGGACCCAACC 440858 Query 20741 CTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATG 20800 ||| ||| | | || ||||| | ||| ||| | ||| |||||||| |||||| Sbjct 440857 ATGGGCAAGATCACGTCGATGCACTTTGCCGGGTGGAAGCTGGGTCTCAAGACTGGCATG 440798 Query 20801 TACTATCTGCGGACCCGAGCC 20821 ||||| |||| || | |||| Sbjct 440797 TACTACTTGCGCACGCAAGCC 440777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548521721404560