Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 197 2e-45 seq8 143 3e-29 seq1 109 6e-19 >seq2 Length=1075658 Score = 197 bits (218), Expect = 2e-45 Identities = 506/763 (66%), Gaps = 8/763 (1%) Strand=Plus/Minus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| | | ||||||| || || | || ||| || ||| || ||| ||| Sbjct 442510 CCTCAGCACATGATCATGCGTGTTGCTGTCGGCATCTGGGGAGACAACATTGAGCGCGTC 442451 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 | || || ||| || | ||| | || | ||| || |||||| | || ||||| ||| Sbjct 442450 CTGGAAACCTACAACCTCATGTCCAGTAAATTCTTCACCCACGCCTCACCTACCCTCTTC 442391 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 ||||| || ||| ||| |||| | || |||||||| || | |||||||| ||| Sbjct 442390 AACGCGGGCACGCCTCAGTGTCAGCTTTCCTCGTGCTTCCTCGTCGACATGAAGGAAGAC 442331 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 ||||| ||||||||||| || |||||| || ||| || || || | | || Sbjct 442330 AGCATCGAGGGCATCTACGACACTCTCAAGACTTGCGCCATGATTTCTAAAATGGCCGGC 442271 Query 53420 GGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 |||||||| | || || | || | ||||| | ||| | || || || | Sbjct 442270 GGTATCGGCCTGAACG--TCCACCGCATTCGTGCTACCGGATCCTACATTGCCGGCACCA 442213 Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 ||||| | | | || |||| || ||||| || |||||||||||||| ||| | |||| Sbjct 442212 ACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAGTCTTCAACAACACTGCCAGATACG 442153 Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597 || |||| || || ||||| ||| | |||||||||||||| ||||| ||||||| Sbjct 442152 TCGACCAAGGCGGCAACAAGCGACCGGGCGCCTTCGCCATCTACCTGGAGCCCTGGCACG 442093 Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657 |||| | | || || || || || | ||| || || | || || | ||| | Sbjct 442092 CCGATGTCTTTGAATTCCTTGATCTCAGAAAGAACCACGGCAAGGAGGAAGTCCGCGCTC 442033 Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717 | ||||| || || |||||||| || |||||||||||| | || |||||| | | Sbjct 442032 GCGACCTCTTCCTTGCGCTGTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGAAGAATG 441973 Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAG 53776 || ||| ||| |||||||| ||||| ||||| || ||| | | || |||||| || Sbjct 441972 GCGACTGGACCCTCATGTGCCCCAACGAATGCCCTGGGCTCGCCGACTG-CTACGGCGAC 441914 Query 53777 GAGTTTAACGAGATGTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAA 53835 |||||| | | ||||| | ||||| || | | ||||| | |||| || Sbjct 441913 GAGTTTGAGGCTTTGTATGAAAAGTACG-AGCGCGAAGGCCGTGGCCGCAAGACAATCCG 441855 Query 53836 GGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACAT 53895 || | || | ||| | | |||||| || ||| ||||| || | || | || Sbjct 441854 CGCCCAGAAGCTGTGGTACTCGATCCTCGAGGCTCAGACCGAGACTGGCAACCCCTTTAT 441795 Query 53896 GTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 | ||||||||| |||| ||||||||||||||||||| Sbjct 441794 GCTGTACAAGGATCATTGCAACAGGAAGAGCAACCAGAAGAAC 441752 Score = 134 bits (148), Expect = 2e-26 Identities = 304/448 (68%), Gaps = 13/448 (3%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| ||||| | ||||| ||||| || ||||| ||| | ||||| |||||||| Sbjct 441226 CGCAACTCGCTGCTGCTCGCGCCCATGCCCACGGCGTCCACGTCGCAGATTCTGGGCAAC 441167 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| |||||| ||||||| |||| ||| || ||| || || ||| Sbjct 441166 AACGAGTGCTTCGAGCCCTACACGTCCAACATTTACCAGCGACGCGTCCTGGCGGGCGAG 441107 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGA-ACCC 55662 || | ||||| || ||||||| || | || |||| | | Sbjct 441106 TTCCAGGTCGTCAACCCATGGCTTCTCAAGGATCTCGTCGACATGGGTCTGTGGTCAGAC 441047 Query 55663 GCAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG---AGAT 55716 || || |||| || || |||| |||||| || ||||||| | | || Sbjct 441046 GCC-ATGAAGAATCGCATCATTGCCGAGAACGGC---TCGATCCAGAACATCCCCAACAT 440991 Query 55717 TCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGA 55775 ||| | ||| | |||| | ||| |||||| ||||| ||| | ||| | || Sbjct 440990 TCC-CGGCGAGGTAAAGGCTCTGTACAAGACGGTCTGGGAAATTTCGCAGCGTCATGTGG 440932 Query 55776 TTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCA 55835 | | ||| || || || ||||| | |||||||||||||||||||| ||||| || Sbjct 440931 TGCAGATGGCCGCCGACCGCGGTGCCTTTATCGACCAGTCCCAGTCTCTCAACATTCACA 440872 Query 55836 TGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGAC 55895 || || | || | ||| |||| | | |||||||||||| |||||||||| ||| | Sbjct 440871 TGAAGGACCCAACCATGGGCAAGATCACGTCGATGCACTTTGCCGGGTGGAAGCTGGGTC 440812 Query 55896 TCAAGACGGGTATGTACTATCTGCGGAC 55923 ||||||| || |||||||| |||| || Sbjct 440811 TCAAGACTGGCATGTACTACTTGCGCAC 440784 >seq8 Length=887404 Score = 143 bits (158), Expect = 3e-29 Identities = 228/327 (70%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 117274 GAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATC 117333 ||| || ||||||| ||||||| || || || || ||||||| | || || || || Sbjct 465446 GAAGATCTTCTTGGCGAACGGTGCCAGACGTGTAAACGTGTAACGGGGACTAGCGGCGTC 465505 Query 117334 CTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTT 117393 ||||||||||||||| | ||| || | || || || || | || || | || || Sbjct 465506 GGAGCCACCAGCAAGACGGGAACCAAAGTTGCCGCTTGGTTCGAGGATATTGATATTATT 465565 Query 117394 GGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATG 117453 || || ||||||||||| || ||| || ||| || || ||| || || ||||| Sbjct 465566 GGAACCGACAAAGTTTTGTGCTAAGCCGATAATGGTCTGCTGCAGGGAAGCTTCGCCATG 465625 Query 117454 GTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGT 117513 |||||||| |||||||| | || || || || || | | | ||||| |||| || Sbjct 465626 ATGATACGCAGTCTGCTCAGAGACATAACCAGCAAGTTCAACGACCTTTTTGTCCTTGGT 465685 Query 117514 CAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGC 117573 |||||| |||| ||| ||||||| || || ||||||| ||||||| || || Sbjct 465686 CAGGTTTCGTTTGAAGCAAGCATAAAGAACTTTTCGCTGACCGGGCTTCAATCCGTCAAT 465745 Query 117574 CACGTGAGGGATCGAACGCTTGATGTC 117600 |||| ||||| |||||| || |||| Sbjct 465746 CACGGACGGGATGGAACGCATGTTGTC 465772 >seq1 Length=2302571 Score = 109 bits (120), Expect = 6e-19 Identities = 301/453 (66%), Gaps = 14/453 (3%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || ||||| || ||||| ||||||||||||||||| || ||| ||||| |||||||| Sbjct 1625250 TATTCACCAACTCGCTTCTCAAAAAAGTTGGTCTTGCCACCCAGGGAGATATTCTCCATA 1625191 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCCATGAGG 74579 | || || || ||| || ||| | ||| || ||| | ||| ||| Sbjct 1625190 AAATCAAACGGATTCGCTGTCTTGTACAC---CTTTTCATTCCCGAGAGCAACCAACAGG 1625134 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || || || |||| ||||| ||| |||| | | | |||||||| || | Sbjct 1625133 CGGTCGGCAACGAATTCGATGTATTGCTTCATCAGTGTGGAGTTCATGCCGAGAAGAGCG 1625074 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATCT 74697 |||||||| ||||| || | || || ||| | | | | ||| || | || | Sbjct 1625073 CACGGCAGAGCCTCCGTCAGGAAATCTTGCTCAA--TGGTGACGGCATCGGTGATGATTT 1625016 Query 74698 TGTGAATGTCTTTGGAAGGGCACT-TTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAA 74755 || ||| |||| | || ||| | | || ||||||| ||| | || | |||| Sbjct 1625015 CTTGGATGA-TTTGCTTGCTTGCTCTTTGCTTGAGATGAGAGTGCAGCAGGCATG-CAAA 1624958 Query 74756 CTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCAT 74815 || ||| | || || || | | ||| | ||| || || || | ||| || ||||| Sbjct 1624957 GTCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGTAAGCCCGGGCAT 1624898 Query 74816 AAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTC 74875 || || |||||||| | ||||||||||| ||| | |||||||||||||||||| || Sbjct 1624897 GAGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAATGCACCACTGAAGAAGATGCCCTC 1624838 Query 74876 GACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 |||| || ||||| || | ||||| ||||| Sbjct 1624837 GACAGCGGCGAAGGCAACCAATCGTTGGGCGAA 1624805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212928750200