Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq23 163 2e-35 seq48 95.1 1e-14 >seq23 Length=560556 Score = 163 bits (180), Expect = 2e-35 Identities = 281/402 (70%), Gaps = 12/402 (3%) Strand=Plus/Minus Query 30061 CACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30117 |||||| ||||| | ||| ||||||| || || || ||||||||| || ||| Sbjct 480183 CACGTAGAACTGCGCAAACA---CGTGGCAAGGCGGCAGCGCCATGAGGTGCAGGTCCCG 480127 Query 30118 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30177 | |||||| |||| || |||||| | | ||| | || || || ||| ||| | Sbjct 480126 CGCGTTCCACGCGCTCATGATGATCCTGCGGTCGTACGGCCTGGTCTTGAGCTTGTCGAT 480067 Query 30178 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTC 30237 | ||| ||||| || |||||| | |||| |||||| | | | |||| |||||| Sbjct 480066 GACGTCGGCGAGCTGGTCGACCCCCTTGCCCGTGTAGTCCGTCTTGGCGTCCACGTACTC 480007 Query 30238 TGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG 30297 ||| || || |||| ||||||||| ||||| || || || ||||| ||||| || | ||| Sbjct 480006 TGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCGAGGTCGCCCTCCTCGCGGTG 479947 Query 30298 CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC 30357 | | |||| |||| | || || | || |||||| ||||||| ||||| || || Sbjct 479946 CGTCAGGCCCAGGCTGTCGAGGAACTCGCGCGACCCGTTGCCGTCCCATATCTTGACGCC 479887 Query 30358 --CTTCTCAGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTC 30414 | || | |||||| | ||||| ||| ||||| || ||||||||||||||| | Sbjct 479886 GACGTCGCTGAGAGCCCG--GGAGTCGGTGTTGCCCTC-GATGAACCACAGCAGCTCGGC 479830 Query 30415 CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 |||||||| | ||| |||| ||| || |||||||| || Sbjct 479829 GACGACGGCGCGCAGAAACACCCGCTTCGTGGTGAGGAGCGG 479788 >seq48 Length=244570 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/181 (74%), Gaps = 8/181 (4%) Strand=Plus/Minus Query 52730 CGTCAAGGTGAGGCTGAGGGCCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT- 52788 ||||||||| || | || | ||| | ||| |||| ||||||||||||||||| Sbjct 120410 CGTCAAGGTCCGGGTTCGGACAACCAAGATCCCGCAGATTGGCGACAAGTTTGCGTCTCG 120351 Query 52789 TCACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCGA 52846 |||||| |||||||| ||| || | | ||| | | | |||||||||||||||| | Sbjct 120350 TCACGGA-CAAAAGGGCACGATTGGTGTGACGTACCGGC--AGGAGGACATGCCCTTT-A 120295 Query 52847 CAAGG-ACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 52905 || || | ||||| ||| ||| ||||||||||||| |||||| |||| || | |||| Sbjct 120294 CACGGGAAGGGGTCACGCCAGACATCATCATCAACCCGCACGCCATTCCGTCGCGAATGA 120235 Query 52906 C 52906 | Sbjct 120234 C 120234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406308176593308