Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq56 95.1 8e-15
seq67 86.0 4e-12
>seq56
Length=194926
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538
|||||| | || |||| || | |||||| ||| ||||| || ||||| || || |
Sbjct 69625 GCCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 69566
Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598
|| || || ||||||| |||||||| || ||||| || || || || ||||| |||||
Sbjct 69565 CAGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGG 69506
Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657
| |||||||||||| ||| ||| | || || | || ||||| |||||
Sbjct 69505 GATGCCCTCCTTGTCTTGGAT-TTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCA 69447
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| |||| ||| || || || || || | || || || || ||||||||
Sbjct 69446 CCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 69398
Score = 91.5 bits (100), Expect = 9e-14
Identities = 138/194 (71%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
||||||||||||||| || || | || |||| | | || ||||| || ||||| |||||
Sbjct 70045 CTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAA 69986
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634
|| | ||||| || || || || | |||||||||||| ||| ||| | || ||
Sbjct 69985 GATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCT-TGAATTTTCGACTTCACAT 69927
Query 34635 TA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693
|| ||| || || |||||| || | || || || || ||||| | ||| || |
Sbjct 69926 TATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGA 69867
Query 34694 CAAAAATCTGCATG 34707
| ||||||||||||
Sbjct 69866 CGAAAATCTGCATG 69853
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | || || | |||| ||| || ||| ||||| || ||||| || || |
Sbjct 69396 CCGCCACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCC 69337
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | ||||| || |||||||| ||||| || || ||||| ||||| |||||
Sbjct 69336 AGGGTGCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGG 69277
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| |||||||||||| ||| ||| | || || | || ||||| ||||||
Sbjct 69276 ATGCCCTCCTTGTCT-TGAATTTTCGACTTGACATTGTCGATGGTGTCAGAAGACTCCAC 69218
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| | ||| || || || ||||| | || || || || || ||||||
Sbjct 69217 CTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCATG 69169
>seq67
Length=171618
Score = 86.0 bits (94), Expect = 4e-12
Identities = 161/234 (69%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
|||| || | || |||| |||||| || || ||||||||||| || ||||| || || |
Sbjct 155685 CGCCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGG 155744
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
|| || || | || || || || || || ||||| || | ||||| ||||| || |
Sbjct 155745 CCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGG 155804
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCC 34656
| | ||||||||||| |||||| | || || | || ||||| ||||
Sbjct 155805 GGATGCCCTCCTTGTCCTGGATCTTG-GACTTGACATTGTCGATGGTGTCGGAAGACTCC 155863
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| || | ||| || || || || || | || || || ||||||||||| |||
Sbjct 155864 ACCTCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 155917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314727877740617
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |