Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq23 154 1e-32 >seq23 Length=560556 Score = 154 bits (170), Expect = 1e-32 Identities = 266/379 (70%), Gaps = 8/379 (2%) Strand=Plus/Plus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 ||||| || || ||||| || |||| | | ||| |||| ||||||||||||||| Sbjct 479788 CCGCTCCTCACCACGAAGCGGGTGTTTCTGCGCGCCGTCGTCGCCGAGCTGCTGTGGTTC 479847 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGG--GGGGTGAAGATCTGGGACG 34340 | ||| ||| || || || ||||| | | || || ||||| ||||||| Sbjct 479848 ATCGAGGGCAACACCGACTCCCGGG--CTCTCAGCGACGTCGGCGTCAAGATATGGGACG 479905 Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACT 34400 ||||||| || || || || |||| | ||| | | || |||||||||||| Sbjct 479906 GCAACGGGTCGCGCGAGTTCCTCGACAGCCTGGGCCTGACGCACCGCGAGGAGGGCGACC 479965 Query 34401 TGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAG 34460 | ||||| |||||||| ||||||||| | |||||||| || ||||| || || || ||| Sbjct 479966 TCGGCCCCGTCTACGGCTTCCAGTGGCGGCACTTTGGCGCAGAGTA-CGTGGACGCCAAG 480024 Query 34461 -CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTGAAGCG 34518 ||||||| |||| |||| | |||||||| || | |||| ||||||| | ||| Sbjct 480025 ACGGACTACACGGGCAAGGGGGTCGACCAGCTCGCCG-ACGTCATCGACAAGCTCAAGAC 480083 Query 34519 GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578 | || | ||| | |||||| | ||| ||||||||||| || ||| || | || || Sbjct 480084 CAGGCCGTACGACCGCAGGATCATCATGAGCGCGTGGAACGCGCGGGACCTGCACCTCAT 480143 Query 34579 GGCGCTCCCCCCGTGCCAC 34597 |||||| || || |||||| Sbjct 480144 GGCGCTGCCGCCTTGCCAC 480162 Score = 154 bits (170), Expect = 1e-32 Identities = 266/379 (70%), Gaps = 8/379 (2%) Strand=Plus/Minus Query 6748 GTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGAT 6807 |||||| || || |||||||| || | || ||| || ||||||||||| ||| | ||| Sbjct 480162 GTGGCAAGGCGGCAGCGCCATGAGGTGCAGGTCCCGCGCGTTCCACGCGCTCATGATGAT 480103 Query 6808 CCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTCCGCTC 6866 ||| | ||| | || | ||| | ||||||| |||| | || |||||||| | | Sbjct 480102 CCTGCGGTCGTACGGCCTGGTCTTGAGCTTGTCGATGACGT-CGGCGAGCTGGTCGACCC 480044 Query 6867 CCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925 ||| |||| ||||||| ||| || || || ||||| || |||||||| | ||||||| Sbjct 480043 CCTTGCCCGTGTAGTCCGTCTTGGCGTCCACG-TACTCTGCGCCAAAGTGCCGCCACTGG 479985 Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGA 6985 || |||||||| ||||| | |||||||||||| || | | ||| | |||| || Sbjct 479984 AAGCCGTAGACGGGGCCGAGGTCGCCCTCCTCGCGGTGCGTCAGGCCCAGGCTGTCGAGG 479925 Query 6986 AAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC--CCGGGACGAGAGCTCCTTGG 7043 || || || ||||||| ||||||| ||||| || || | | ||||| || || Sbjct 479924 AACTCGCGCGACCCGTTGCCGTCCCATATCTTGACGCCGACGTCGCTGAGAG--CCCGGG 479867 Query 7044 TGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACAC 7103 || ||| ||| | ||||||||||||||| |||| ||| | | |||| | Sbjct 479866 AGTCGGTGTTGCCCTCGATGAACCACAGCAGCTCGGCGACGACGGCGCGCAGAAACACCC 479807 Query 7104 GTTTCGTCGTCAGCAGCGG 7122 | ||||| || || ||||| Sbjct 479806 GCTTCGTGGTGAGGAGCGG 479788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448259884127280