Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq23 154 1e-32
>seq23
Length=560556
Score = 154 bits (170), Expect = 1e-32
Identities = 266/379 (70%), Gaps = 8/379 (2%)
Strand=Plus/Plus
Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282
||||| || || ||||| || |||| | | ||| |||| |||||||||||||||
Sbjct 479788 CCGCTCCTCACCACGAAGCGGGTGTTTCTGCGCGCCGTCGTCGCCGAGCTGCTGTGGTTC 479847
Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGG--GGGGTGAAGATCTGGGACG 34340
| ||| ||| || || || ||||| | | || || ||||| |||||||
Sbjct 479848 ATCGAGGGCAACACCGACTCCCGGG--CTCTCAGCGACGTCGGCGTCAAGATATGGGACG 479905
Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACT 34400
||||||| || || || || |||| | ||| | | || ||||||||||||
Sbjct 479906 GCAACGGGTCGCGCGAGTTCCTCGACAGCCTGGGCCTGACGCACCGCGAGGAGGGCGACC 479965
Query 34401 TGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAG 34460
| ||||| |||||||| ||||||||| | |||||||| || ||||| || || || |||
Sbjct 479966 TCGGCCCCGTCTACGGCTTCCAGTGGCGGCACTTTGGCGCAGAGTA-CGTGGACGCCAAG 480024
Query 34461 -CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGACACCTTGAAGCG 34518
||||||| |||| |||| | |||||||| || | |||| ||||||| | |||
Sbjct 480025 ACGGACTACACGGGCAAGGGGGTCGACCAGCTCGCCG-ACGTCATCGACAAGCTCAAGAC 480083
Query 34519 GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578
| || | ||| | |||||| | ||| ||||||||||| || ||| || | || ||
Sbjct 480084 CAGGCCGTACGACCGCAGGATCATCATGAGCGCGTGGAACGCGCGGGACCTGCACCTCAT 480143
Query 34579 GGCGCTCCCCCCGTGCCAC 34597
|||||| || || ||||||
Sbjct 480144 GGCGCTGCCGCCTTGCCAC 480162
Score = 154 bits (170), Expect = 1e-32
Identities = 266/379 (70%), Gaps = 8/379 (2%)
Strand=Plus/Minus
Query 6748 GTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGAT 6807
|||||| || || |||||||| || | || ||| || ||||||||||| ||| | |||
Sbjct 480162 GTGGCAAGGCGGCAGCGCCATGAGGTGCAGGTCCCGCGCGTTCCACGCGCTCATGATGAT 480103
Query 6808 CCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTCCGCTC 6866
||| | ||| | || | ||| | ||||||| |||| | || |||||||| | |
Sbjct 480102 CCTGCGGTCGTACGGCCTGGTCTTGAGCTTGTCGATGACGT-CGGCGAGCTGGTCGACCC 480044
Query 6867 CCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGG 6925
||| |||| ||||||| ||| || || || ||||| || |||||||| | |||||||
Sbjct 480043 CCTTGCCCGTGTAGTCCGTCTTGGCGTCCACG-TACTCTGCGCCAAAGTGCCGCCACTGG 479985
Query 6926 AACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGA 6985
|| |||||||| ||||| | |||||||||||| || | | ||| | |||| ||
Sbjct 479984 AAGCCGTAGACGGGGCCGAGGTCGCCCTCCTCGCGGTGCGTCAGGCCCAGGCTGTCGAGG 479925
Query 6986 AAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCC--CCGGGACGAGAGCTCCTTGG 7043
|| || || ||||||| ||||||| ||||| || || | | ||||| || ||
Sbjct 479924 AACTCGCGCGACCCGTTGCCGTCCCATATCTTGACGCCGACGTCGCTGAGAG--CCCGGG 479867
Query 7044 TGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACAC 7103
|| ||| ||| | ||||||||||||||| |||| ||| | | |||| |
Sbjct 479866 AGTCGGTGTTGCCCTCGATGAACCACAGCAGCTCGGCGACGACGGCGCGCAGAAACACCC 479807
Query 7104 GTTTCGTCGTCAGCAGCGG 7122
| ||||| || || |||||
Sbjct 479806 GCTTCGTGGTGAGGAGCGG 479788
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448259884127280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |