Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq67 154 3e-32
seq56 152 1e-31
seq13 138 3e-27
>seq67
Length=171618
Score = 154 bits (170), Expect = 3e-32
Identities = 163/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || ||| ||| || |||||||| || || || ||||| | |||||
Sbjct 155702 AGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCC 155761
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| || || || ||||| || || | || |||||||||
Sbjct 155762 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 155821
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||||||||| || || |||||||| ||||| |||
Sbjct 155822 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTC 155881
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| |||||||| ||||| || || | |||||| ||
Sbjct 155882 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 155916
>seq56
Length=194926
Score = 152 bits (168), Expect = 1e-31
Identities = 161/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||| || |||||||| || |||||||| || || || | || | ||| ||
Sbjct 69837 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAATGTTCGTCCGTCC 69778
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || |||||||| || || ||||| || |||| |||||||||||
Sbjct 69777 TCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATCCCTTCCTTGTCT 69718
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || ||||| || |||||||| || ||||| || || ||||| ||
Sbjct 69717 TGAATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTCAACTTCCAGCGTGATTGTT 69658
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||||||| || ||||| ||||| | |||||
Sbjct 69657 TTTCCCGTCAGTGTCTTGACAAAGATTTGCAT 69626
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || || ||||| ||||| || || |||||||| || || || ||||| | ||||||
Sbjct 69381 AGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCT 69322
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||| || || || ||||| | ||| || ||||| || || | || ||||||||
Sbjct 69321 TCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCT 69262
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| || || || || || |||||||||||||| || |||||||| ||||| |||
Sbjct 69261 TGAATTTTCGACTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTC 69202
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| ||||| |||||||| || | |||||
Sbjct 69201 TTTCCGGTGAGGGTCTTTACGAAGATTTGCAT 69170
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || || || || ||||| || || |||||||| || || || ||||| | || |||
Sbjct 69609 AGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCT 69550
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || || ||||| || ||||| | |||||| ||||| || || | || ||||||||
Sbjct 69549 TCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCT 69490
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || || || || ||||||||||| || || ||||| || ||||| |||
Sbjct 69489 TGGATTTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCCAGGGTGATGGTC 69430
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| ||||| || || | ||||||
Sbjct 69429 TTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 69398
>seq13
Length=702126
Score = 138 bits (152), Expect = 3e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| || ||||| || || || ||||| | ||||| |||||||||||||| || |||||
Sbjct 289255 TTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 289196
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| || || ||||| ||||| | || ||||||||||||||||| || || || |||
Sbjct 289195 AAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 289136
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| ||| || |||||||| ||||| ||||| ||||| || ||||| |||||
Sbjct 289135 ATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 289077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159145331615885
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |