Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq56 131 1e-25
seq67 111 1e-19
seq13 89.7 4e-13
>seq56
Length=194926
Score = 131 bits (144), Expect = 1e-25
Identities = 157/211 (74%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||| || || ||| ||| || || || || || ||||| | ||||||| |||| ||
Sbjct 69835 CACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAATGTTCGTCCGTCCTC 69776
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| ||||| ||||| ||||| ||||||||||||| ||| | | || |||||
Sbjct 69775 GAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATCCCTTCCTTGTCTTG 69716
Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
|| ||| |||| ||| | | | || || |||||| || |||| |||||| |||
Sbjct 69715 AATCTTCGACTTGA-CGTTGTCAATGGTGTCTGACGACTCAACTTCCAGCGTGATTGTTT 69657
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|||||||||| || || ||||||||||||||
Sbjct 69656 TTCCCGTCAGTGTCTTGACAAAGATTTGCAT 69626
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||| ||| || ||| || || || || || || ||||| || || || | || ||
Sbjct 69378 ACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTCG 69319
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
|||||||| || ||||| || | ||||||||||||| || | || ||| |||||
Sbjct 69318 AGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGA 69259
Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255
|||||| |||| | | | || || |||||||| || | ||||| | |||
Sbjct 69258 ATTTTCGACTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTT 69199
Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| || || || || || |||||||||||
Sbjct 69198 CCGGTGAGGGTCTTTACGAAGATTTGCAT 69170
>seq67
Length=171618
Score = 111 bits (122), Expect = 1e-19
Identities = 156/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | |||||| || || |||||||| || || || || || ||||| || || || |
Sbjct 155698 GCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCC 155757
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
|| || ||||| ||||| ||||| || || ||||||||||||| ||| | || ||| ||
Sbjct 155758 ATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTT 155817
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248
|||| ||| || |||| | | | || ||| |||||||| || | |||||
Sbjct 155818 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 155877
Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
| || ||||| || || || || || || ||||||||
Sbjct 155878 GGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 155916
>seq13
Length=702126
Score = 89.7 bits (98), Expect = 4e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 39097 TTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA 39156
|| || || || || ||||| || ||||| | || || ||||| ||||| ||||| ||
Sbjct 289255 TTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 289196
Query 39157 AGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC 39216
| |||||||||||||| || | || ||| |||||| ||| || |||| | |
Sbjct 289195 AAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 289136
Query 39217 ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAA 39275
| ||| ||| ||||| || || | |||||| | || |||||||| || || |||||
Sbjct 289135 ATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 289077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429543249445937
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |