Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq56 156 1e-32
seq67 134 3e-26
seq13 125 2e-23
>seq56
Length=194926
Score = 156 bits (172), Expect = 1e-32
Identities = 167/221 (76%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||| || ||||| || ||||| || || |||| ||||| |||||||| |||
Sbjct 69846 CGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAATGTT 69787
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || || || |||||||| || || ||||||||||| || |||||||| ||||| |||
Sbjct 69786 CGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATCCCT 69727
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||||||||| ||||| ||| || || ||||||||||| | || || || | |
Sbjct 69726 TCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTCAACTTCCAGC 69667
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || || ||||||| || || | || | ||||||
Sbjct 69666 GTGATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCAT 69626
Score = 140 bits (154), Expect = 8e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || || || || |||||||| || |||| ||||| ||||||| || | ||||||
Sbjct 69381 AGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCT 69322
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| ||||| || ||||| ||||| | || || ||||||||||| || || |||||||||
Sbjct 69321 TCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCT 69262
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| || || ||| ||| ||||||||||| || | ||||| || | ||||| |||
Sbjct 69261 TGAATTTTCGACTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTC 69202
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || | || |||| ||| | ||||||
Sbjct 69201 TTTCCGGTGAGGGTCTTTACGAAGATTTGCAT 69170
Score = 138 bits (152), Expect = 3e-27
Identities = 163/221 (74%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||| || || ||||| |||||||| || |||| ||||| ||||||| ||
Sbjct 69618 CGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 69559
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || ||||| || || || ||||| ||||| | ||||| ||||||||||| || ||
Sbjct 69558 CGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGGATGCCC 69499
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||||||||| || ||| ||| ||||||||||| || | ||||| || |
Sbjct 69498 TCCTTGTCTTGGATTTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCCAGG 69439
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||| || || | || || | ||| | |||||
Sbjct 69438 GTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 69398
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || ||||| | || || || ||||| | ||||| ||||| | |||||||||||
Sbjct 70065 AGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCC 70006
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| ||||| ||||| || || || || ||||| || |||||||||
Sbjct 70005 TCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCT 69946
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| || || ||||||| || ||||| || || | ||||| || | |||||| |||
Sbjct 69945 TGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTC 69886
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || |||| || || | ||| | |||||
Sbjct 69885 TTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 69854
>seq67
Length=171618
Score = 134 bits (148), Expect = 3e-26
Identities = 164/224 (73%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | ||| || | ||| || ||| || || |||| ||||| ||||||| ||
Sbjct 155693 CGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 155752
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| ||||| || |||||||| ||||| ||||| ||||| || |||||||| || || ||
Sbjct 155753 CGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCC 155812
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| |||||||| ||| ||| ||||||||||| || | ||||| || |
Sbjct 155813 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGG 155872
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| ||||| ||||| | || || | ||| | ||||| ||
Sbjct 155873 GTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 155916
>seq13
Length=702126
Score = 125 bits (138), Expect = 2e-23
Identities = 122/157 (78%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594
||||| ||||||| |||| ||||| || |||||||| ||||| ||||| | || ||
Sbjct 289246 TTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGC 289187
Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654
|||||||| || || || |||||||| |||||||| ||| ||| ||||| |||||
Sbjct 289186 TGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCG 289127
Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCA 225691
|||| || || || | |||||| |||||||||||||
Sbjct 289126 GAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCA 289090
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192524339591606
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |