Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq23 105 5e-18 seq48 91.5 1e-13 >seq23 Length=560556 Score = 105 bits (116), Expect = 5e-18 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||| ||||||||| ||||| || || || ||||| ||||| || | |||| | | Sbjct 479999 AAGTGCCGCCACTGGAAGCCGTAGACGGGGCCGAGGTCGCCCTCCTCGCGGTGCGTCAGG 479940 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCT 30134 ||| |||| | || || | || |||||| ||||||| ||||| || || | || Sbjct 479939 CCCAGGCTGTCGAGGAACTCGCGCGACCCGTTGCCGTCCCATATCTTGACGCCGACGTCG 479880 Query 30135 CGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACG 30193 | |||||| | ||||| ||| ||||| || ||||||||||||||| | |||||| Sbjct 479879 CTGAGAGCCCG--GGAGTCGGTGTTGCCCTC-GATGAACCACAGCAGCTCGGCGACGACG 479823 Query 30194 GCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30228 || | ||| |||| ||| || |||||||| || Sbjct 479822 GCGCGCAGAAACACCCGCTTCGTGGTGAGGAGCGG 479788 >seq48 Length=244570 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/181 (73%), Gaps = 8/181 (4%) Strand=Plus/Minus Query 53494 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCATC-CT 53552 ||||||||| || | |||| ||| | ||| |||| |||||||||||||| || | Sbjct 120410 CGTCAAGGTCCGGGTTCGGACAACCAAGATCCCGCAGATTGGCGACAAGTTTGCGTCTCG 120351 Query 53553 TCACGGCGCAAAAGGGGACATGCGGAGCG--GTCCTGACTCAGGAGGACATGCCCTTCGA 53610 |||||| |||||||| || || | | || | | | |||||||||||||||| | Sbjct 120350 TCACGGA-CAAAAGGGCACGATTGGTGTGACGTACCGGC--AGGAGGACATGCCCTTT-A 120295 Query 53611 CAAGG-ACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 53669 || || | ||||| ||| ||| ||||||||||||| |||||| |||| || | |||| Sbjct 120294 CACGGGAAGGGGTCACGCCAGACATCATCATCAACCCGCACGCCATTCCGTCGCGAATGA 120235 Query 53670 C 53670 | Sbjct 120234 C 120234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406160977398814