Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1 134 1e-26 >seq1 Length=2302571 Score = 134 bits (148), Expect = 1e-26 Identities = 300/446 (67%), Gaps = 6/446 (1%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 || |||||||| |||||||| || || || || || ||||| | | || ||||| Sbjct 1625256 TTCTGGTATTCACCAACTCGCTTCTCAAAAAAGTTGGTCTTGCCACCCAGGGAGATATTC 1625197 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 |||||||||||||||||||| | || ||||| |||||| | ||||| || | | Sbjct 1625196 TCCATAAAATCAAACGGATTCGCTGTCTTGTACACCTTTTCATTCCCGAGAGCAACCAAC 1625137 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-A 4435 | ||||| || || ||||| || || || |||| ||| | |||| || || | | | Sbjct 1625136 AGGCGGTCGGCAACGAATTCGATGTATTGCTTCATCAGTGTGGAGTTCATGCCGAGAAGA 1625077 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | ||| || || || | |||| || ||||| || || || ||||| || ||||| || Sbjct 1625076 GCGCAC-GGCAGAGCCTCCGTCAGGAAATCTTGCTCAATGGTGACGGCATCGGTGATGAT 1625018 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAA--ACAATAAACACGCA 4553 |||| || | | || || | ||| || || | || | || ||| Sbjct 1625017 TTCTTGGATGATTTGCTTGCTTG--CTCTTTGCTTGAGATGAGAGTGCAGCAGGCATGCA 1624960 Query 4554 AAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGC 4613 || || |||||||| ||||| | | || |||||||| || || || | |||||| Sbjct 1624959 AAGTCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGTAAGCCCGGGC 1624900 Query 4614 ATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCT 4673 || | || | ||| || |||||||| || | || |||| ||| ||||| ||||| Sbjct 1624899 ATGAGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAATGCACCACTGAAGAAGATGCCC 1624840 Query 4674 TCTACGGCGGCAAACGCTACTAATCG 4699 || || ||||| || || || ||||| Sbjct 1624839 TCGACAGCGGCGAAGGCAACCAATCG 1624814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427047263104517