Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq23 152 4e-32
seq48 95.1 9e-15
>seq23
Length=560556
Score = 152 bits (168), Expect = 4e-32
Identities = 264/379 (70%), Gaps = 6/379 (2%)
Strand=Plus/Minus
Query 27347 CGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 27406
||||||| || || || ||||||||| || ||| | |||||| |||| || |||||
Sbjct 480163 CGTGGCAAGGCGGCAGCGCCATGAGGTGCAGGTCCCGCGCGTTCCACGCGCTCATGATGA 480104
Query 27407 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCC 27466
| | | ||| | || || || ||| ||| | | ||| ||||| || ||||
Sbjct 480103 TCCTGCGGTCGTACGGCCTGGTCTTGAGCTTGTCGATGACGTCGGCGAGCTGGTCGACCC 480044
Query 27467 CCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGA 27526
|| | |||| |||||| | | |||| ||||||||| || || |||| ||| ||||
Sbjct 480043 CCTTGCCCGTGTAGTCCGTCTTGGCGTCCACGTACTCTGCGCCAAAGTGCCGCCACTGGA 479984
Query 27527 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 27586
| ||||| || || || ||||| ||||| || | |||| | |||| |||| | |
Sbjct 479983 AGCCGTAGACGGGGCCGAGGTCGCCCTCCTCGCGGTGCGTCAGGCCCAGGCTGTCGAGGA 479924
Query 27587 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCTCGGAGAGCTCTTTGGA 27644
| || | || |||||| ||||||| ||||| || || | || | |||||| | |||
Sbjct 479923 ACTCGCGCGACCCGTTGCCGTCCCATATCTTGACGCCGACGTCGCTGAGAGCCCG--GGA 479866
Query 27645 GTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCC 27703
|| ||| ||||| || ||||||||||||||| | |||||||| | ||| ||||
Sbjct 479865 GTCGGTGTTGCCCTC-GATGAACCACAGCAGCTCGGCGACGACGGCGCGCAGAAACACCC 479807
Query 27704 TCTTGGTCGTGAGGAGGGG 27722
||| || |||||||| ||
Sbjct 479806 GCTTCGTGGTGAGGAGCGG 479788
>seq48
Length=244570
Score = 95.1 bits (104), Expect = 9e-15
Identities = 135/181 (75%), Gaps = 8/181 (4%)
Strand=Plus/Minus
Query 48510 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-CT 48568
||||||||| || | |||| ||| | ||| |||| || |||||||||||||| |
Sbjct 120410 CGTCAAGGTCCGGGTTCGGACAACCAAGATCCCGCAGATTGGCGACAAGTTTGCGTCTCG 120351
Query 48569 TCACGGCGCAAAAGGGGACATGTGGAGCCGTCCTGACC--CAGGAGGACATGCCCTTCGA 48626
|||||| |||||||| || ||| | | | | ||| ||||||||||||||||| |
Sbjct 120350 TCACGGA-CAAAAGGGCACGATTGGTGT-GACGT-ACCGGCAGGAGGACATGCCCTTT-A 120295
Query 48627 CAAGG-ACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 48685
|| || | ||||| ||| ||| ||||||||||||| |||||| |||| || | ||||
Sbjct 120294 CACGGGAAGGGGTCACGCCAGACATCATCATCAACCCGCACGCCATTCCGTCGCGAATGA 120235
Query 48686 C 48686
|
Sbjct 120234 C 120234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369505177987319
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |