Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq23 152 4e-32 seq48 95.1 9e-15 >seq23 Length=560556 Score = 152 bits (168), Expect = 4e-32 Identities = 264/379 (70%), Gaps = 6/379 (2%) Strand=Plus/Minus Query 27347 CGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 27406 ||||||| || || || ||||||||| || ||| | |||||| |||| || ||||| Sbjct 480163 CGTGGCAAGGCGGCAGCGCCATGAGGTGCAGGTCCCGCGCGTTCCACGCGCTCATGATGA 480104 Query 27407 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCC 27466 | | | ||| | || || || ||| ||| | | ||| ||||| || |||| Sbjct 480103 TCCTGCGGTCGTACGGCCTGGTCTTGAGCTTGTCGATGACGTCGGCGAGCTGGTCGACCC 480044 Query 27467 CCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGA 27526 || | |||| |||||| | | |||| ||||||||| || || |||| ||| |||| Sbjct 480043 CCTTGCCCGTGTAGTCCGTCTTGGCGTCCACGTACTCTGCGCCAAAGTGCCGCCACTGGA 479984 Query 27527 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 27586 | ||||| || || || ||||| ||||| || | |||| | |||| |||| | | Sbjct 479983 AGCCGTAGACGGGGCCGAGGTCGCCCTCCTCGCGGTGCGTCAGGCCCAGGCTGTCGAGGA 479924 Query 27587 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCTCGGAGAGCTCTTTGGA 27644 | || | || |||||| ||||||| ||||| || || | || | |||||| | ||| Sbjct 479923 ACTCGCGCGACCCGTTGCCGTCCCATATCTTGACGCCGACGTCGCTGAGAGCCCG--GGA 479866 Query 27645 GTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCC 27703 || ||| ||||| || ||||||||||||||| | |||||||| | ||| |||| Sbjct 479865 GTCGGTGTTGCCCTC-GATGAACCACAGCAGCTCGGCGACGACGGCGCGCAGAAACACCC 479807 Query 27704 TCTTGGTCGTGAGGAGGGG 27722 ||| || |||||||| || Sbjct 479806 GCTTCGTGGTGAGGAGCGG 479788 >seq48 Length=244570 Score = 95.1 bits (104), Expect = 9e-15 Identities = 135/181 (75%), Gaps = 8/181 (4%) Strand=Plus/Minus Query 48510 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGTGACAAGTTTGCGTC-CT 48568 ||||||||| || | |||| ||| | ||| |||| || |||||||||||||| | Sbjct 120410 CGTCAAGGTCCGGGTTCGGACAACCAAGATCCCGCAGATTGGCGACAAGTTTGCGTCTCG 120351 Query 48569 TCACGGCGCAAAAGGGGACATGTGGAGCCGTCCTGACC--CAGGAGGACATGCCCTTCGA 48626 |||||| |||||||| || ||| | | | | ||| ||||||||||||||||| | Sbjct 120350 TCACGGA-CAAAAGGGCACGATTGGTGT-GACGT-ACCGGCAGGAGGACATGCCCTTT-A 120295 Query 48627 CAAGG-ACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 48685 || || | ||||| ||| ||| ||||||||||||| |||||| |||| || | |||| Sbjct 120294 CACGGGAAGGGGTCACGCCAGACATCATCATCAACCCGCACGCCATTCCGTCGCGAATGA 120235 Query 48686 C 48686 | Sbjct 120234 C 120234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369505177987319