Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2 156 6e-33 seq1 111 2e-19 >seq2 Length=1075658 Score = 156 bits (172), Expect = 6e-33 Identities = 456/699 (65%), Gaps = 10/699 (1%) Strand=Plus/Plus Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014 ||||||||||| || |||||||| | | |||||| |||| | || || || ||||| Sbjct 441936 CCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATG 441995 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 ||||| || || ||||| || |||| || || || || | | ||| || || || Sbjct 441996 AAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCG 442055 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 |||||| | ||||| || || || | | ||| | ||||| || || || || || Sbjct 442056 TGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATG 442115 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | | || ||||| || || || || || || | |||||||| ||||| || | Sbjct 442116 GCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAG 442175 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254 |||| || ||| |||| | ||||| || || || || || || | ||| || ||| Sbjct 442176 ACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCG 442235 Query 78255 CTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCG 78314 | || ||||| | | | || || || || ||||| ||||| || | ||| Sbjct 442236 GTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCG 442295 Query 78315 CAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAA 78374 ||| || | || |||||||| ||||| || ||||| ||| |||||| | || || Sbjct 442296 CAAGTCTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAG 442355 Query 78375 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTA 78434 || || | ||| ||| || || || || || | || || || || || || Sbjct 442356 CACGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTG 442415 Query 78435 AACCATTTTTCAGAAAGTAGATTGTATGTTTC----AATAGCTGATTCTATGTC-CCATT 78489 || |||| || | || ||||| ||||| | ||| | | | |||| || Sbjct 442416 AAGAATTTACTGGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGT-TGTCTCCCCA 442474 Query 78490 GATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTAT 78549 |||| || || || |||||||| | ||| |||||||||| ||| || |||| | Sbjct 442475 GATG----CCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCGT 442530 Query 78550 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 78609 | |||| | || ||| |||| || || |||||||| || | || |||| Sbjct 442531 CCAGCTTCAGGAGATACGATCGCTCCAGCGTCTTGAAACCAAAGTACTGATAGTTGAAGT 442590 Query 78610 CTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGT 78648 |||||||||||| ||| |||| | || | ||||||| Sbjct 442591 CTCTCTCGTAAACAATGGCAGAGTCGAGCTCCTCTTTGT 442629 >seq1 Length=2302571 Score = 111 bits (122), Expect = 2e-19 Identities = 285/434 (66%), Gaps = 0/434 (0%) Strand=Plus/Minus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 || || |||||||| || || ||||| ||||| || || ||||| ||| || ||||| Sbjct 1625256 TTCTGGTATTCACCAACTCGCTTCTCAAAAAAGTTGGTCTTGCCACCCAGGGAGATATTC 1625197 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 |||||||||||||| ||||| ||| || || | |||| | || | | | | Sbjct 1625196 TCCATAAAATCAAACGGATTCGCTGTCTTGTACACCTTTTCATTCCCGAGAGCAACCAAC 1625137 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 || | || ||||||||||| || ||| ||||||| | | ||||| || | ||| Sbjct 1625136 AGGCGGTCGGCAACGAATTCGATGTATTGCTTCATCAGTGTGGAGTTCATGCCGAGAAGA 1625077 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC 48089 || ||||||||||| || || ||||| || || ||||| ||||| || || Sbjct 1625076 GCGCACGGCAGAGCCTCCGTCAGGAAATCTTGCTCAATGGTGACGGCATCGGTGATGATT 1625017 Query 48090 GATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAA 48149 | | ||| || |||| | | | | ||| || | |||||||| Sbjct 1625016 TCTTGGATGATTTGCTTGCTTGCTCTTTGCTTGAGATGAGAGTGCAGCAGGCATGCAAAG 1624957 Query 48150 TCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATT 48209 || || | ||| || || | || | |||||| || || || || |||||||| Sbjct 1624956 TCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGTAAGCCCGGGCATG 1624897 Query 48210 AGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 48269 || || || || ||||||||||| || | |||||| | ||| ||||| ||||| || Sbjct 1624896 AGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAATGCACCACTGAAGAAGATGCCCTCG 1624837 Query 48270 ACGGCCGCAAATGC 48283 || || || || || Sbjct 1624836 ACAGCGGCGAAGGC 1624823 Score = 105 bits (116), Expect = 9e-18 Identities = 187/271 (69%), Gaps = 5/271 (2%) Strand=Plus/Minus Query 48424 AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATC 48483 ||||| |||| | ||||| || ||||| || || ||||| || ||||| ||||| | Sbjct 1624611 AAAGA--ATACGTCTCGGAATGGATATTCTCCATCATGATCTGGAACCCGTAGAAACAAC 1624554 Query 48484 TCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTC 48543 ||||| | | ||| ||||| | || || ||| ||| || || || || || | Sbjct 1624553 GGGCTTCAGGAACCTGCACCTCGCCGCTGAACCGCTCAACCAGGTTTTCGTTGACGATGC 1624494 Query 48544 CATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA 48603 |||| |||||||| ||||| || | || ||| ||||| ||||| | | ||| Sbjct 1624493 CATCCGAGGCAGCAAAGAATGCCAAGATGTGAGAAATGAAATACTTTTCATCGTCGTTCA 1624434 Query 48604 GT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATG 48660 | ||||||||||| | | ||| || || | |||| ||||| |||||||| || | Sbjct 1624433 GGCGATTATTCCAGTCGTGCAAATCCTTGGACAGGTCTATCTCTTCGGCTGTCCAGAAAG 1624374 Query 48661 ATGCCTCTGCTTTTTTATACATATTCCATAT 48691 | ||||| || || || ||||| | |||||| Sbjct 1624373 AAGCCTCAGCCTTCTTGTACATTTGCCATAT 1624343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694664901171360