Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 172 8e-38 seq1 125 1e-23 >seq2 Length=1075658 Score = 172 bits (190), Expect = 8e-38 Identities = 445/677 (66%), Gaps = 12/677 (2%) Strand=Plus/Plus Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 ||||| ||||| || || ||||| | | ||| || |||| | || || || ||||| Sbjct 441936 CCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATG 441995 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 ||||| || || ||||| || |||| || || || || | | ||| || || || Sbjct 441996 AAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCG 442055 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 |||||| | ||||| ||||| || | | ||| | ||||| || || || || || Sbjct 442056 TGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATG 442115 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | | |||||||| || || || || || || | |||||||||||||| || | Sbjct 442116 GCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAG 442175 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCA 76849 |||| || ||| |||| | |||||| || || || || || || | ||| || ||| Sbjct 442176 ACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCG 442235 Query 76850 CATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 76909 |||||||| | ||||| || || || ||||||||||| || | || Sbjct 442236 GTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCG 442295 Query 76910 CAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAA 76969 || || | ||||| ||||||||||| || || || ||| |||||| | || || Sbjct 442296 CAAGTCTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAG 442355 Query 76970 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTG 77029 || || | ||| ||| || || || || || | ||||| || || || ||| Sbjct 442356 CACGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTG 442415 Query 77030 AACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATAT------CCCAT 77083 || |||| || | || ||||| ||||| | || || || | |||| Sbjct 442416 AAGAATTTACTGGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGTTGTCTCCCCA- 442474 Query 77084 TGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTA 77143 |||| || ||||| |||||||| | ||| |||||||||||||| ||| |||| Sbjct 442475 -GATG----CCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCG 442529 Query 77144 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 77203 | | |||| | || ||| |||| || || |||||||| || | || ||| Sbjct 442530 TCCAGCTTCAGGAGATACGATCGCTCCAGCGTCTTGAAACCAAAGTACTGATAGTTGAAG 442589 Query 77204 TCTCTTTCGTAAATAAT 77220 ||||| ||||||| ||| Sbjct 442590 TCTCTCTCGTAAACAAT 442606 >seq1 Length=2302571 Score = 125 bits (138), Expect = 1e-23 Identities = 204/293 (70%), Gaps = 3/293 (1%) Strand=Plus/Minus Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 || || | ||| || || || || | | |||| | || ||||| || || || || Sbjct 1624635 TCCTTGATATACGTGTCGATCAATAAAGAATACGTCTCGGAATGGATATTCTCCATCATG 1624576 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA 47010 ||||| || ||||| ||||| | ||||||| || ||| ||||| | || || ||| Sbjct 1624575 ATCTGGAACCCGTAGAAACAACGGGCTTCAGGAACCTGCACCTCGCCGCTGAACCGCTCA 1624516 Query 47011 GACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATA 47070 || || || || || || ||||| |||||||| |||||||| | || ||| Sbjct 1624515 ACCAGGTTTTCGTTGACGATGCCATCCGAGGCAGCAAAGAATGCCAAGATGTGAGAAATG 1624456 Query 47071 AAATATTTTTCATCGGTAGTCAGT---TTATTCCAGTCATTGATATCTTTTGATATATCT 47127 ||||| ||||||||| |||| ||||||||||| | | ||| || || | ||| Sbjct 1624455 AAATACTTTTCATCGTCGTTCAGGCGATTATTCCAGTCGTGCAAATCCTTGGACAGGTCT 1624396 Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 | ||||| ||||||||||| || ||||| || || || ||||| | |||||| Sbjct 1624395 ATCTCTTCGGCTGTCCAGAAAGAAGCCTCAGCCTTCTTGTACATTTGCCATAT 1624343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712930398655680