Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq2 172 8e-38
seq1 125 1e-23
>seq2
Length=1075658
Score = 172 bits (190), Expect = 8e-38
Identities = 445/677 (66%), Gaps = 12/677 (2%)
Strand=Plus/Plus
Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609
||||| ||||| || || ||||| | | ||| || |||| | || || || |||||
Sbjct 441936 CCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATG 441995
Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669
||||| || || ||||| || |||| || || || || | | ||| || || ||
Sbjct 441996 AAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCG 442055
Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729
|||||| | ||||| ||||| || | | ||| | ||||| || || || || ||
Sbjct 442056 TGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATG 442115
Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789
|| | | |||||||| || || || || || || | |||||||||||||| || |
Sbjct 442116 GCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAG 442175
Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCA 76849
|||| || ||| |||| | |||||| || || || || || || | ||| || |||
Sbjct 442176 ACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCG 442235
Query 76850 CATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 76909
|||||||| | ||||| || || || ||||||||||| || | ||
Sbjct 442236 GTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCG 442295
Query 76910 CAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAA 76969
|| || | ||||| ||||||||||| || || || ||| |||||| | || ||
Sbjct 442296 CAAGTCTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAG 442355
Query 76970 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTG 77029
|| || | ||| ||| || || || || || | ||||| || || || |||
Sbjct 442356 CACGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTG 442415
Query 77030 AACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATAT------CCCAT 77083
|| |||| || | || ||||| ||||| | || || || | ||||
Sbjct 442416 AAGAATTTACTGGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGTTGTCTCCCCA- 442474
Query 77084 TGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTA 77143
|||| || ||||| |||||||| | ||| |||||||||||||| ||| ||||
Sbjct 442475 -GATG----CCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCG 442529
Query 77144 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 77203
| | |||| | || ||| |||| || || |||||||| || | || |||
Sbjct 442530 TCCAGCTTCAGGAGATACGATCGCTCCAGCGTCTTGAAACCAAAGTACTGATAGTTGAAG 442589
Query 77204 TCTCTTTCGTAAATAAT 77220
||||| ||||||| |||
Sbjct 442590 TCTCTCTCGTAAACAAT 442606
>seq1
Length=2302571
Score = 125 bits (138), Expect = 1e-23
Identities = 204/293 (70%), Gaps = 3/293 (1%)
Strand=Plus/Minus
Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950
|| || | ||| || || || || | | |||| | || ||||| || || || ||
Sbjct 1624635 TCCTTGATATACGTGTCGATCAATAAAGAATACGTCTCGGAATGGATATTCTCCATCATG 1624576
Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCA 47010
||||| || ||||| ||||| | ||||||| || ||| ||||| | || || |||
Sbjct 1624575 ATCTGGAACCCGTAGAAACAACGGGCTTCAGGAACCTGCACCTCGCCGCTGAACCGCTCA 1624516
Query 47011 GACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATA 47070
|| || || || || || ||||| |||||||| |||||||| | || |||
Sbjct 1624515 ACCAGGTTTTCGTTGACGATGCCATCCGAGGCAGCAAAGAATGCCAAGATGTGAGAAATG 1624456
Query 47071 AAATATTTTTCATCGGTAGTCAGT---TTATTCCAGTCATTGATATCTTTTGATATATCT 47127
||||| ||||||||| |||| ||||||||||| | | ||| || || | |||
Sbjct 1624455 AAATACTTTTCATCGTCGTTCAGGCGATTATTCCAGTCGTGCAAATCCTTGGACAGGTCT 1624396
Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180
| ||||| ||||||||||| || ||||| || || || ||||| | ||||||
Sbjct 1624395 ATCTCTTCGGCTGTCCAGAAAGAAGCCTCAGCCTTCTTGTACATTTGCCATAT 1624343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712930398655680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |