Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09]
449 sequences; 39,397,682 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq56 131 4e-25
seq67 100 7e-16
>seq56
Length=194926
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || |||||||| || || || || ||||||||||| ||||| | || | ||||||
Sbjct 69381 AGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCT 69322
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || ||| || || ||||| | | ||||||||| | || ||| || ||||| |||
Sbjct 69321 TCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCT 69262
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|||||||| |||||| | || | | |||| ||| ||| || || || || || ||
Sbjct 69261 TGAATTTTCGACTTGACATTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTC 69202
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || ||||| ||||| ||||||| |||||
Sbjct 69201 TTTCCGGTGAGGGTCTTTACGAAGATTTGCAT 69170
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || || || || || ||||| || ||||||||||| ||||| || |||| || ||
Sbjct 69837 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAATGTTCGTCCGTCC 69778
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||| |||||||| | ||||||||| | | || |||||||| |||
Sbjct 69777 TCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATCCCTTCCTTGTCT 69718
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| || ||||| | || | | ||||||| ||| ||||| || || || |||
Sbjct 69717 TGAATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTCAACTTCCAGCGTGATTGTT 69658
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| || ||||| || |||| |||||
Sbjct 69657 TTTCCCGTCAGTGTCTTGACAAAGATTTGCAT 69626
Score = 120 bits (132), Expect = 7e-22
Identities = 156/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || ||||| || || || || || ||||||||||| ||||| | || | || |||
Sbjct 69609 AGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCT 69550
Query 151953 TCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || ||| || || ||||| |||| | |||||||| | || ||| || ||||| ||
Sbjct 69549 TCGAGTTGTTTGCCAGCAAAGATCAAGCGT-TGCTGGTCGGGCGGGATGCCCTCCTTGTC 69491
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||| ||||| |||||| | || | | |||| ||| ||| || || || || || ||
Sbjct 69490 TTGGATTTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCCAGGGTGATGGT 69431
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || ||||| ||||| ||||||| ||||||
Sbjct 69430 CTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 69398
Score = 105 bits (116), Expect = 2e-17
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| || || || | || ||||| ||||| |||||||| ||||||| |||||||||||
Sbjct 70066 GAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATC 70007
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || || ||||| || | |||||| || | | || || ||||| ||
Sbjct 70006 CTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTC 69947
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||||||||| || ||| | || | | | || || ||| || || || || || ||
Sbjct 69946 TTGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGT 69887
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || ||||| ||||| | ||||||
Sbjct 69886 CTTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 69854
>seq67
Length=171618
Score = 100 bits (110), Expect = 7e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972
||| || ||||||||||| ||||| | || | ||||| || || || || || ||
Sbjct 155722 CTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 155781
Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032
||| || | ||||||||| | | ||| || ||||| || || || || |||||| |
Sbjct 155782 GATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 155841
Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092
|| | | |||| ||| ||| || || || || || || || |||||||| ||||| ||
Sbjct 155842 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGAC 155901
Query 152093 GAAGACCTGCATTTTACC 152110
||| | |||||| || ||
Sbjct 155902 GAAAATCTGCATCTTGCC 155919
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153814162285279
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |