Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq67 147 2e-30 seq56 140 2e-28 seq13 122 6e-23 >seq67 Length=171618 Score = 147 bits (162), Expect = 2e-30 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||| ||| || ||||||||||| ||||||||||| ||||| Sbjct 155687 CCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 155746 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || || |||||||| || |||||||| | |||||||| || | || Sbjct 155747 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 155806 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | || ||||| ||| ||||| ||| || ||| | |||||||||| || |||| Sbjct 155807 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGAAGACTCCA 155864 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| | || || ||||| |||||||||||||| ||||| || ||||| Sbjct 155865 CCTCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 155913 >seq56 Length=194926 Score = 140 bits (154), Expect = 2e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | || ||||||||| || ||| |||||| ||||||||||| || Sbjct 69856 CATGCCGCCGCGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 69797 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| | | || |||| || |||||||| ||||||||||| | |||||||| || | Sbjct 69796 GGCCAATGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGG 69737 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| || |||||| ||| | | | |||||||| | || || Sbjct 69736 GGGAATCCCTTCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTC 69677 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || |||| ||| || || |||||||| || ||||| || |||||||||||| Sbjct 69676 AACTTCCAGCGTGATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCATG 69625 Score = 138 bits (152), Expect = 8e-28 Identities = 159/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||| ||||| ||| ||||| ||||||||||| ||||| || ||| | || || Sbjct 69378 ACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTCG 69319 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || || ||||||||||| |||||||| || | || | || ||||| || Sbjct 69318 AGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGA 69259 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || ||| ||| || ||| | |||||||| | || |||||||| | || || |||| Sbjct 69258 ATTTTCGACTTGACATTGT--CGATGGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCT 69201 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| ||||||||||| ||||||||||||||| Sbjct 69200 TTCCGGTGAGGGTCTTTACGAAGATTTGCATG 69169 Score = 127 bits (140), Expect = 1e-24 Identities = 171/236 (72%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || || || || || ||| ||||| ||||||||||| Sbjct 69631 TTGCATGCCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTA 69572 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| || ||| |||| || || || || || ||||||||||| || ||||| || Sbjct 69571 GTCGGCCAGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTC 69512 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281 | || | || ||||| || || ||| ||| || ||| | |||||||||| Sbjct 69511 GGGCGGGATGCCCTCCTTGTCTTGGATTTTCGCCTTGACATTGT--CGATGGTGTCGGAA 69454 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||||||||| || || ||||| || ||||||||||| |||||||| ||||| Sbjct 69453 GACTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 69398 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| | ||| ||||||||| |||||||| ||||| || | | | || || Sbjct 70063 CACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCCTC 70004 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || |||||||| | ||||||||||| | ||| | || ||||| || Sbjct 70003 AAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCTTG 69944 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || ||| ||||| | | ||||| || | || |||||||| | ||| || ||||| Sbjct 69943 AATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTCTT 69884 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || ||||| ||||| || |||||| Sbjct 69883 CCCGGTCAGCGTCTTGACGAAAATCTGCATG 69853 >seq13 Length=702126 Score = 122 bits (134), Expect = 6e-23 Identities = 138/183 (75%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| || |||||||| ||||| || || | || ||||||||||| || ||||||| Sbjct 289257 CCTTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 289198 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||||||||||||| || | ||| | || ||||| ||| ||||| ||| || ||| Sbjct 289197 TCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 289138 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||||| ||| || ||||| | ||| || ||||| ||||| ||||||||||| Sbjct 289137 --CGATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCAC 289080 Query 44326 GAA 44328 || Sbjct 289079 AAA 289077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988430065033