Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq56 167 6e-36 seq67 150 4e-31 >seq56 Length=194926 Score = 167 bits (184), Expect = 6e-36 Identities = 161/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| ||||| || ||||||||||||||||| || ||| Sbjct 69173 CAAATCTTCGTAAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCTGAC 69232 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| || ||||| ||||| || || ||||| || |||||||| Sbjct 69233 ACCATCGACAATGTCAAGTCGAAAATTCAAGACAAGGAGGGCATCCCGCCCGACCAGCAG 69292 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||||||||||||||| | || || ||||| || ||| || Sbjct 69293 CGCTTGATCTTTGCTGGTAAACAGCTCGAAGATGGCCGCACCCTGGCCGACTACAACATC 69352 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||| || || ||||| ||| Sbjct 69353 CAGAAGGAATCCACCCTTCATCTGGTT 69379 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || |||||||| ||||| || || || || |||||| Sbjct 69629 CAAATCTTTGTCAAGACACTGACGGGAAAAACAATCACGCTGGAAGTTGAGTCGTCAGAC 69688 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| |||||||| ||||| ||||| || || || |||||||| Sbjct 69689 ACCATTGACAACGTCAAGTCGAAGATTCAAGACAAGGAAGGGATTCCCCCCGACCAGCAG 69748 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| ||||| || |||||||| || ||| | || | ||||| || ||| || Sbjct 69749 CGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACATTGGCCGACTACAACATC 69808 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 69809 CAGAAGGAGTCCACCCTGCACCTGGT 69834 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||| |||||||| || ||| Sbjct 69401 CAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGTCTTCCGAC 69460 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| || || || ||||| || || ||||| || ||||||||| Sbjct 69461 ACCATCGACAATGTCAAGGCGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAGCAA 69520 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| |||||||| || | || || ||||| || ||| || Sbjct 69521 CGCTTGATCTTTGCTGGCAAACAACTCGAAGACGGCCGCACCCTGGCCGACTACAACATC 69580 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || ||||| || || ||||| ||| || Sbjct 69581 CAGAAGGAATCCACCCTCCATCTCGTTCTG 69610 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || || || ||||| ||||||||||| || || Sbjct 69857 CAGATTTTCGTCAAGACGCTGACCGGGAAGACCATCACGCTCGAGGTGGAGTCGTCTGAT 69916 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || || ||||| ||||| || || || ||||| || ||||| Sbjct 69917 ACCATTGATAATGTGAAGTCGAAAATTCAAGACAAGGAGGGCATTCCTCCTGATCAGCAG 69976 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || || ||||| || ||||| || || || ||||| || ||| | Sbjct 69977 CGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGAACCCTAGCCGACTACAACATT 70036 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || |||| || || Sbjct 70037 CAAAAGGAGTCGACGTTGCACCTGGT 70062 >seq67 Length=171618 Score = 150 bits (166), Expect = 4e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || ||||||||||||||||| || ||| Sbjct 155910 CAGATTTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTCGAGGTGGAGTCTTCCGAC 155851 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 155850 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 155791 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || || |||||||| ||||| | || || ||||| || ||| || Sbjct 155790 CGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTACAACATC 155731 Query 178104 CAAAAAGA 178111 || || || Sbjct 155730 CAGAAGGA 155723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203724275160106