Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000687475.1_202014-05-09] 449 sequences; 39,397,682 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq67 167 2e-36 seq56 150 2e-31 seq13 105 6e-18 >seq67 Length=171618 Score = 167 bits (184), Expect = 2e-36 Identities = 179/235 (76%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 ||||| ||||| || || | ||||| ||||| |||||||||||||| ||||| |||||| Sbjct 155684 CCGCCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCG 155743 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 | |||||||| | || |||||||||||||| || || || || ||||| ||||| | | Sbjct 155744 GCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGG 155803 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810 || | || |||||||||| ||| || ||| || | || | |||||| |||| Sbjct 155804 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGAAGACT 155861 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||||| | || || || || ||||| || ||||| |||||||||||||| || Sbjct 155862 CCACCTCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 155916 >seq56 Length=194926 Score = 150 bits (166), Expect = 2e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| ||||| | |||||| ||||| ||| ||||||||| ||||| ||||||| Sbjct 69853 GCCGCCGCGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 69794 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | || || |||| ||||||||||||||||| || || || ||||| ||||| | ||| Sbjct 69793 CAATGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGG 69734 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||||||| | ||| | || | | ||| | | | ||||| |||||| | Sbjct 69733 AATCCCTTCCTTGT-CTTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTCAA 69675 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | |||| ||| || ||||| |||||||| ||||| || || || |||||| Sbjct 69674 CTTCCAGCGTGATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCATG 69625 Score = 136 bits (150), Expect = 4e-27 Identities = 172/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||||| |||| ||| |||||| |||||||| ||||||| Sbjct 70081 GCCACCACGCAGGCGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGC 70022 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| | | | || || |||||||| || || || || || ||||| || || | || Sbjct 70021 TAGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGG 69962 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCA-ACGACGACACAGTGTCGCTCGACTCC 41812 || || ||||||||| ||| |||| | ||||| | | | | || || ||||||| Sbjct 69961 AATGCCCTCCTTGTCT-TGAATTTTCGACTTCACATTATCA-ATGGTATCAGACGACTCC 69904 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | ||| || || || || ||||||||||| ||||||||||||||| Sbjct 69903 ACCTCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCATG 69853 Score = 134 bits (148), Expect = 1e-26 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | || ||||| || ||| |||||||| ||||| ||||||| Sbjct 69625 GCCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 69566 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| ||||| || ||||| || || |||| ||| || ||||| | || Sbjct 69565 CAGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGG 69506 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || ||||||||| |||||| ||| || | ||| |||||| |||||| Sbjct 69505 GATGCCCTCCTTGTCTTGGATTTTCGCCTTGACATTGTCGATG--GTGTCGGAAGACTCC 69448 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| || || || || || || || ||||| ||||| |||||||| Sbjct 69447 ACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 69398 Score = 125 bits (138), Expect = 7e-24 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | |||||||| || ||| |||||||| ||||| ||||||| Sbjct 69396 CCGCCACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCC 69337 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||| || || || || |||| |||||| ||||| | || Sbjct 69336 AGGGTGCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGG 69277 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || ||||||||| ||| |||| | ||| || | ||| ||||| |||||| Sbjct 69276 ATGCCCTCCTTGTCT-TGAATTTTCGACTTGACATTGTCGATG--GTGTCAGAAGACTCC 69220 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | || || || || || || || ||||||||||| || |||||| Sbjct 69219 ACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCATG 69169 >seq13 Length=702126 Score = 105 bits (116), Expect = 6e-18 Identities = 135/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||||||||| ||||||| ||||| || | || || ||||||||||| || || | Sbjct 289257 CCTTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 289198 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| ||||| ||||| | || | || |||||||||| ||| || ||| || | Sbjct 289197 TCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 289138 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | |||||| ||||| ||||| | ||| || || || |||||||| ||||| || Sbjct 289137 CG--ATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCAC 289080 Query 41851 GAAA 41854 ||| Sbjct 289079 AAAA 289076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301405318800