Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq32 188 7e-43 seq3 165 8e-36 seq31 154 2e-32 seq25 105 7e-18 >seq32 Length=314566 Score = 188 bits (208), Expect = 7e-43 Identities = 275/384 (72%), Gaps = 6/384 (2%) Strand=Plus/Minus Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 |||||||| ||||| | ||||||||| | || ||| | ||||| | | || || Sbjct 225456 AAGGCCGACTGGGCCATCCGCTGGATCCAAGACAAGGAGTCTAGCTTCGCCCAACGATTG 225397 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTT--TCGGGCAGTTTCGCCGCCATATTTT 117101 || |||||||| || ||||||||| ||||||| | | ||| ||||| |||| |||| Sbjct 225396 GTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCA--TTCGCGTCCATCTTTT 225339 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||||| ||||||||||||||||| || || ||| ||||| ||||| ||| | | Sbjct 225338 GGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCAAACGAACTCATATCCCGTG 225279 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 |||||||| |||| ||||||||| || ||||| | ||| | ||| || | | Sbjct 225278 ACGAGGGTTTGCACACCGACTTTGCATGCCTGCTGCACTCTCATCTCAAGCAAAGAGCAA 225219 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || | | || || ||| ||||||| || ||| |||| ||||| ||||| | Sbjct 225218 GCAAGCAAATCATCCAAGAAATCATCACCGATGCCGTCACCATTGAGCAAGATTTCCTGA 225159 Query 117282 CCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATC 117340 | || || ||||| ||||| ||| || || | || | | | |||| |||||||||| Sbjct 225158 CGGAGGCTCTGCC-GTGCGCTCTTCTCGGCATGAACTCCACACTGATGAAGCAATACATC 225100 Query 117341 GAGTTCGTCGCCGACAGGCTGCTG 117364 || ||||| |||||| | ||| || Sbjct 225099 GAATTCGTTGCCGACCGCCTGTTG 225076 Score = 150 bits (166), Expect = 2e-31 Identities = 204/284 (72%), Gaps = 3/284 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | ||| ||| | |||||| Sbjct 225873 ATATGGCAAATGTACAAGAAGGCTGAGGCTTCTTTCTGGACAGCCGAAGAGATAGACCTG 225814 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | ||||||| | ||| |||||||| | || ||||||| Sbjct 225813 TCCAAGGATTTGCACGACTGGAATAATCGCCTGAACGACGATGAAAAGTATTTCATTTCT 225754 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | |||| || || || ||| || |||||||||||||| || ||||| ||||| Sbjct 225753 CACATCTTGGCATTCTTTGCTGCCTCGGATGGCATCGTCAACGAAAACCTGGTTGAGCGG 225694 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||||||||| | || || || || |||||||| || |||||| ||| Sbjct 225693 TTCAGCGGCGAGGTGCAGGTTCCTGAAGCCCGTTGTTTCTACGGGTTCCAGATCATGATG 225634 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 ||||| | || || || | |||||| | ||||||||||| Sbjct 225633 GAGAATATCCATTCCGAGACGTATTCTTTATTGATCGACACGTA 225590 >seq3 Length=1259731 Score = 165 bits (182), Expect = 8e-36 Identities = 177/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || ||||||||| |||| || || | Sbjct 603195 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTCGAGGTGGAGTCT 603136 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | ||||| || || | ||||| |||||||||||| | ||| Sbjct 603135 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 603076 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| |||||||||| || ||||| ||||| || || | |||||||| ||||||| Sbjct 603075 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCCGACTAC 603016 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 ||||||||||||||| ||| ||||| | ||| ||||| || | || |||||| Sbjct 603015 AACATCCAGAAGGAGAGCACCCTGCACTTGGTGCTGCGCCTGCGCGGTGGCGGC 602962 >seq31 Length=345369 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||||||| | || || || | || Sbjct 217851 ATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGTCTTCC 217910 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||||| | ||||| ||||||||||| | |||||| Sbjct 217911 GACACCATCGACAATGTCAAGGCGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 217970 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || |||||||| || || |||| |||||||| |||||||||| Sbjct 217971 CAACGCTTGATCTTTGCTGGCAAACAACTCGAAGACGGCCGCACCCTGGCCGACTACAAC 218030 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| || ||||| || ||||| || | |||||| Sbjct 218031 ATCCAGAAGGAATCCACCCTCCATCTCGTTCTGCGCCTGCGCGGCGGC 218078 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || ||||| || || ||||||||| |||| || || | | Sbjct 217623 ATGCAAATCTTCGTAAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGTCTTCT 217682 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| ||||||| ||||| ||||||||||| | |||||| Sbjct 217683 GACACTATCGACAATGTCAAGTCGAAAATTCAAGACAAGGAGGGCATCCCGCCCGACCAG 217742 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || || |||||||| || || | |||||||| |||||||||| Sbjct 217743 CAGCGCTTGATCTTTGCTGGTAAACAGCTCGAAGATGGCCGCACCCTGGCCGACTACAAC 217802 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| || ||||| || | ||| || | ||||| Sbjct 217803 ATCCAGAAGGAATCCACCCTTCATCTGGTTCTTCGCCTGCGTGGCGG 217849 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || ||||| ||||| ||||| | || || || | | Sbjct 218079 ATGCAAATCTTTGTCAAGACACTGACGGGAAAAACAATCACGCTGGAAGTTGAGTCGTCA 218138 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| ||||| || || || ||| | ||||| Sbjct 218139 GACACCATTGACAACG-TCAAGTCGAAGATTCAAGACAAGGAAGGGATTCCCCCCGACCA 218197 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| || ||||| ||||| || |||| || || | ||||||||| Sbjct 218198 GCAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACATTGGCCGACTACAA 218257 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| ||||| || ||| |||| | | |||||| Sbjct 218258 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTCCGCGGCGGC 218306 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || || || |||||||| |||| || || | | Sbjct 218307 ATGCAGATTTTCGTCAAGACGCTGACCGGGAAGACCATCACGCTCGAGGTGGAGTCGTCT 218366 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| ||||||| ||||| |||||||| || | || ||| Sbjct 218367 GATACCATTGATAATGTGAAGTCGAAAATTCAAGACAAGGAGGGCATTCCTCCTGATCAG 218426 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| || || || ||||| || || | | | ||||| |||||||||| Sbjct 218427 CAGCGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGAACCCTAGCCGACTACAAC 218486 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || || |||||| | ||| |||| || ||| | ||| || | || ||| Sbjct 218487 ATTCAAAAGGAGTCGACGTTGCACCTGGTGCTCCGCCTGCGTGGTGGC 218534 >seq25 Length=408197 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 || || || || || |||||||| |||||||| |||| ||||| || |||||| | Sbjct 312591 TTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGAGGTCGAGTCCTCCGACACGATC 312532 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| ||||||||||| | |||||||| || | Sbjct 312531 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTTTG 312472 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| |||||||| || | || ||||| |||||||||||| |||||| Sbjct 312471 ATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGAACCCTGGCCGACTACAACATTCAGAAG 312412 Query 40879 G 40879 | Sbjct 312411 G 312411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218304806640