Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq31 89.7 8e-13 >seq31 Length=345369 Score = 89.7 bits (98), Expect = 8e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || || || || || | ||| | || | | Sbjct 218307 ATGCAGATTTTCGTCAAGACGCTGACCGGGAAGACCATCACGCTCGAGGTGGAGTCGTCT 218366 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| |||| | || |||||||||||| || || || || || |||||||| Sbjct 218367 GATACCATTGATAATGTGAAGTCGAAAATTCAAGACAAGGAGGGCATTCCTCCTGATCAG 218426 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || || || | |||||| | |||| ||| || || || Sbjct 218427 CAGCGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGAACCCTAGCCGACTACAAC 218486 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||||| || || || ||||| |||| | || | || ||||| Sbjct 218487 ATTCAAAAGGAGTCGACGTTGCACCTGGTGCTCCGCCTGCGTGGTGG 218533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755454687395200