Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1 197 3e-45 >seq1 Length=1559860 Score = 197 bits (218), Expect = 3e-45 Identities = 420/620 (68%), Gaps = 13/620 (2%) Strand=Plus/Minus Query 248826 CTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGA 248885 ||||| |||||| ||||||||| |||||||||||| || | || |||||||| || || Sbjct 379389 CTTTGGTTTCAAGACGCTGGAGCGATCGTATCTCCTGAAGCTGGACGGCAAGATTGTCGA 379330 Query 248886 ACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAG 248945 |||| |||||||||| | ||||| || |||||||| || || |||| ||| | Sbjct 379329 ACGACCTCAGCACATGATCATGCGTGTTGCTGTCGGCATCTGGGGAGACAACATTGAGCG 379270 Query 248946 CGTGCTCGAGACGTACACCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGAC 249002 ||| || || || |||| | ||| ||| || || | || || ||| |||| || Sbjct 379269 CGTCCTGGAAACCTACAACCTCATGTCCAGTAAATTCT---TCACCCACGCCTCACCTAC 379213 Query 249003 GCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGC 249061 ||||||||||| || || | || | |||||| ||||||||| || | | |||| Sbjct 379212 CCTCTTCAACGCGGGCACGCCTC-AGTGTCAGCTTTCCTCGTGCTTCCTCGTCGACATGA 379154 Query 249062 AAGACGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAA 249120 | || ||| |||| ||||| || ||||| || || || | || | |||||||||| Sbjct 379153 AGGAAGACAGCATCGAGGGCATCTACGACACTCTCAAGACTTGC-GCCATGATTTCTAAA 379095 Query 249121 TTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAA 249180 | || ||||| ||||| || |||| | ||| || || | || || ||||| Sbjct 379094 ATGGCCGGCGGTATCGGCCTGAACGTCCACCGCATTCGTGCTACCGGATCCTACATTGCC 379035 Query 249181 GGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCC 249240 || || || || | | || |||| ||| | || ||| ||| | ||| ||| Sbjct 379034 GGCACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAGTCTTCAACAACACTGCC 378975 Query 249241 AGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTG 249297 || | | || |||| | ||| | ||| ||| | |||||||| || |||| Sbjct 378974 AGATACGTCGACCAAGGCGGCAACAAGCGACCGGGCGCCTTCGCCATCTACCTGGAGCCC 378915 Query 249298 TGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATG 249357 |||||||||||| | || || ||||| || | | ||||||| ||||||| ||| | Sbjct 378914 TGGCACGCCGATGTCTTTGAATTCCTTGATCTCAGAAAGAACCACGGCAAGGAGGAAGTC 378855 Query 249358 AGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAG 249417 | || || ||||||||| | |||||| || ||||| | |||||| || ||| || Sbjct 378854 CGCGCTCGCGACCTCTTCCTTGCGCTGTGGATCCCCGACCTCTTCATGAAGCGTGTCGAG 378795 Query 249418 GCCGACGGCGATTGGACGCT 249437 | ||||| ||||| || Sbjct 378794 AAGAATGGCGACTGGACCCT 378775 Score = 86.0 bits (94), Expect = 1e-11 Identities = 175/256 (68%), Gaps = 18/256 (7%) Strand=Plus/Plus Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070 |||| || |||| || ||||| || ||||||||||| || ||||| |||||||| | Sbjct 129134 TGCTGCTCTACGGCCCCCCCGGCACGGGCAAGACGTCCACGATCCTAGCGCTGGCGAGGC 129193 Query 254071 CCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAAC 254130 | | | || | |||||| | || ||||| ||||| ||||| || ||||| | Sbjct 129194 GCATCTACGGAACCGCAAACATGCGTCAGATGGTGCTGGAGCTCAACGCCTCGGACGACC 129253 Query 254131 GCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTT------CTCCAAG---ATGT--- 254178 |||| | ||||| || ||||| |||||||||| || | ||||| || | Sbjct 129254 GCGGCATCGACGTGGTGCGCGAGCAGATCAAGACGTTTGCCAGCACCAAGCAAATCTTCG 129313 Query 254179 CGAT---TTCGTCGTTCCAACCCGGCT-GTCCGCC--TTTCAAGCTCGTGATCCTGGACG 254232 | || ||||| | | || ||| | ||| ||||||||| | |||||||||| Sbjct 129314 CCATGGGCGCGTCGGCCAAGGCCAGCTCGATGGCCGGGTTCAAGCTCATCATCCTGGACG 129373 Query 254233 AGGCGGACACCATGAC 254248 |||| ||| ||||||| Sbjct 129374 AGGCCGACGCCATGAC 129389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073764487689152