Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq1 197 3e-45
>seq1
Length=1559860
Score = 197 bits (218), Expect = 3e-45
Identities = 420/620 (68%), Gaps = 13/620 (2%)
Strand=Plus/Minus
Query 248826 CTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGA 248885
||||| |||||| ||||||||| |||||||||||| || | || |||||||| || ||
Sbjct 379389 CTTTGGTTTCAAGACGCTGGAGCGATCGTATCTCCTGAAGCTGGACGGCAAGATTGTCGA 379330
Query 248886 ACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAG 248945
|||| |||||||||| | ||||| || |||||||| || || |||| ||| |
Sbjct 379329 ACGACCTCAGCACATGATCATGCGTGTTGCTGTCGGCATCTGGGGAGACAACATTGAGCG 379270
Query 248946 CGTGCTCGAGACGTACACCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGAC 249002
||| || || || |||| | ||| ||| || || | || || ||| |||| ||
Sbjct 379269 CGTCCTGGAAACCTACAACCTCATGTCCAGTAAATTCT---TCACCCACGCCTCACCTAC 379213
Query 249003 GCTCTTCAACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGC 249061
||||||||||| || || | || | |||||| ||||||||| || | | ||||
Sbjct 379212 CCTCTTCAACGCGGGCACGCCTC-AGTGTCAGCTTTCCTCGTGCTTCCTCGTCGACATGA 379154
Query 249062 AAGACGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAA 249120
| || ||| |||| ||||| || ||||| || || || | || | ||||||||||
Sbjct 379153 AGGAAGACAGCATCGAGGGCATCTACGACACTCTCAAGACTTGC-GCCATGATTTCTAAA 379095
Query 249121 TTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAA 249180
| || ||||| ||||| || |||| | ||| || || | || || |||||
Sbjct 379094 ATGGCCGGCGGTATCGGCCTGAACGTCCACCGCATTCGTGCTACCGGATCCTACATTGCC 379035
Query 249181 GGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCC 249240
|| || || || | | || |||| ||| | || ||| ||| | ||| |||
Sbjct 379034 GGCACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAGTCTTCAACAACACTGCC 378975
Query 249241 AGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTG 249297
|| | | || |||| | ||| | ||| ||| | |||||||| || ||||
Sbjct 378974 AGATACGTCGACCAAGGCGGCAACAAGCGACCGGGCGCCTTCGCCATCTACCTGGAGCCC 378915
Query 249298 TGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATG 249357
|||||||||||| | || || ||||| || | | ||||||| ||||||| ||| |
Sbjct 378914 TGGCACGCCGATGTCTTTGAATTCCTTGATCTCAGAAAGAACCACGGCAAGGAGGAAGTC 378855
Query 249358 AGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAG 249417
| || || ||||||||| | |||||| || ||||| | |||||| || ||| ||
Sbjct 378854 CGCGCTCGCGACCTCTTCCTTGCGCTGTGGATCCCCGACCTCTTCATGAAGCGTGTCGAG 378795
Query 249418 GCCGACGGCGATTGGACGCT 249437
| ||||| ||||| ||
Sbjct 378794 AAGAATGGCGACTGGACCCT 378775
Score = 86.0 bits (94), Expect = 1e-11
Identities = 175/256 (68%), Gaps = 18/256 (7%)
Strand=Plus/Plus
Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070
|||| || |||| || ||||| || ||||||||||| || ||||| |||||||| |
Sbjct 129134 TGCTGCTCTACGGCCCCCCCGGCACGGGCAAGACGTCCACGATCCTAGCGCTGGCGAGGC 129193
Query 254071 CCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAAC 254130
| | | || | |||||| | || ||||| ||||| ||||| || ||||| |
Sbjct 129194 GCATCTACGGAACCGCAAACATGCGTCAGATGGTGCTGGAGCTCAACGCCTCGGACGACC 129253
Query 254131 GCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTT------CTCCAAG---ATGT--- 254178
|||| | ||||| || ||||| |||||||||| || | ||||| || |
Sbjct 129254 GCGGCATCGACGTGGTGCGCGAGCAGATCAAGACGTTTGCCAGCACCAAGCAAATCTTCG 129313
Query 254179 CGAT---TTCGTCGTTCCAACCCGGCT-GTCCGCC--TTTCAAGCTCGTGATCCTGGACG 254232
| || ||||| | | || ||| | ||| ||||||||| | ||||||||||
Sbjct 129314 CCATGGGCGCGTCGGCCAAGGCCAGCTCGATGGCCGGGTTCAAGCTCATCATCCTGGACG 129373
Query 254233 AGGCGGACACCATGAC 254248
|||| ||| |||||||
Sbjct 129374 AGGCCGACGCCATGAC 129389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073764487689152
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |