Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1 524 7e-144
seq31 143 2e-29
seq3 96.9 3e-15
seq25 89.7 5e-13
>seq1
Length=1559860
Score = 524 bits (580), Expect = 7e-144
Identities = 1265/1890 (67%), Gaps = 42/1890 (2%)
Strand=Plus/Plus
Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164
|| ||| || || ||||| |||| | ||||| | || ||||| | || ||||||||
Sbjct 377559 CTGGTCAACGGTGAACTGGATGGGGGCCGCGGCGGCTTGCGTGCGCAAGTAGTACATGCC 377618
Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224
||||| ||||||| ||||||| || ||| || |||||||| | || || | ||
Sbjct 377619 AGTCTTGAGACCCAGCTTCCACCCGGCAAAGTGCATCGACGTGATCTTGCCCATGGTTGG 377678
Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284
| ||||| | |||| ||||| ||| |||||||| || || || ||||||||
Sbjct 377679 GTCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCGGC 377738
Query 22285 CATATTTATCA-ATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343
||| | | || ||| |||| ||| |||||||| || ||||||||||| | | | ||
Sbjct 377739 CATCTGCACCACATG-ACGCTGCGAAATTTCCCAGACCGTCTTGTACAGAGCCTTTACCT 377797
Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403
| || || ||| |||||| || ||||| | | ||||| ||| || |
Sbjct 377798 CGCCGGGAATGTTGGGGATGTTCTGGATCGAGCCGTTCTCGGCAATGATGCGATTCTTCA 377857
Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAG--ATGACGGTTCACCAC 22461
| | || ||||| ||| ||| || | ||| |||| || ||| |||| || ||
Sbjct 377858 TGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATG--GGTTGACGAC 377915
Query 22462 TTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGA 22521
|| |||||||| | || |||||| || |||||||||||||| ||| | || ||||| |
Sbjct 377916 CTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCTCGAAGCA 377975
Query 22522 TTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGA 22581
|| ||||| ||||| ||||| | || || || || ||||| ||||| | ||| |||||
Sbjct 377976 CTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCAGCAGCGA 378035
Query 22582 GTTTCTCAAGCCGTGCT--TTGAAATTTTACTC-TTGAGC--ATCGACCAGTCCCACAGA 22636
||| | | ||||||| |||| | | ||| ||||| ||| ||| |||||||
Sbjct 378036 GTTGCGAATCCCGTGCTCCTTGA---TCTGCTCCTTGAGGGAATC--CCACTCCCACAAG 378090
Query 22637 TCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGG-GCT 22695
|||||||||||||| || |||||| || | |||| | ||| | ||||| | |
Sbjct 378091 TCGGACGGCGTCACGTT---CCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGGAGAT 378147
Query 22696 GCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAACG 22754
|||| | |||| ||| ||||| | | ||| || || || | |||| ||| |
Sbjct 378148 CCCTT-GAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTC-CACCGACGCCGTCAAGG 378205
Query 22755 CGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG---GCGGCGGCGACGCTTT 22811
|| ||| || || ||||| || || | |||||||| ||| || ||| || ||
Sbjct 378206 CGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGG-GAGACT-- 378262
Query 22812 CGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCG 22871
| | ||||| || | | | ||| ||||| |||| || ||||| || | ||| || |
Sbjct 378263 CAAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATGG 378322
Query 22872 GTCGGTTTTTCAGATTCGACACTTT--TGCCTCGGGCAAAGGATACCAATTCGAATCGAT 22929
| || | || || | || ||| || | | || || || |||||
Sbjct 378323 GACGATGCCGCATGTTG--CTGTTGCGTGCTTCTTGGACGGGGTAGTGGTTGACGTCGAT 378380
Query 22930 TGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTA 22989
| |||| | |||| | || | || | | ||||||||
Sbjct 378381 GATCTTGTTGAGATTTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGAAGTCGTA 378440
Query 22990 AACGCCC-GATTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGC 23046
||| | | ||| | ||||| | | ||| | |||||||| ||||| |||||
Sbjct 378441 CTTGCCTTGGTCGTAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGACGGC 378500
Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106
|||||||| || || |||||| | ||| ||||| || || ||| | || ||
Sbjct 378501 AACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAATGGT 378560
Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166
||||| || |||||||||| || | ||||| ||||||||| ||||| | || |
Sbjct 378561 TCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGGGGTT 378620
Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG 23226
||| |||||| ||| | ||||| ||||| ||||| |||| ||| | | |||
Sbjct 378621 GCCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGGGCGCGGATT-GTCT 378679
Query 23227 CACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAAC 23285
|| | | |||||| ||||||||||| ||||| || ||||| ||| | ||||| |
Sbjct 378680 TGCGGCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGTAGC 378739
Query 23286 AGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTG--AGTCATTTTC 23343
||||||| || || || ||| | || |||||||| |||| | | | || || ||
Sbjct 378740 AGTCGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGGGTCCAG-TCGCCATTC-TTCTC 378797
Query 23344 AACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCAC 23403
|| || |||| || || || || ||||| || || ||| || ||||| ||||| ||
Sbjct 378798 GACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGAC 378857
Query 23404 CTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGG 23463
||||| |||||| ||||||| | | ||| | || || || || || || ||||| ||
Sbjct 378858 TTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGG 378917
Query 23464 CTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGC 23523
||| ||||| | ||| || |||||||||| ||| |||||||| || |||||||| | |||
Sbjct 378918 CTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGC 378977
Query 23524 CGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGC 23583
||||||||| | |||| ||||| || |||| ||||| || | |||| ||| ||
Sbjct 378978 AGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGC 379037
Query 23584 CACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTT 23643
| || || | || |||| | ||| |||| | || || || ||| || |||
Sbjct 379038 AATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTT 379097
Query 23644 CGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGT 23703
|| ||||| ||||| || ||||||||||||||||||||||||||||| || || |
Sbjct 379098 AGAAATCATGGCGCAAGTCTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCAT 379157
Query 23704 CGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGG 23763
|||| | ||| ||||| || | || | ||||| | || ||| || || ||
Sbjct 379158 GTCGACGAGGAAGCACGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGG 379217
Query 23764 GCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAAT 23823
|||||| || ||| || | | ||||| || ||||| || || | | || |||||
Sbjct 379218 TGAGGCGTGGGTGAAGAATTTACTGGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAAT 379277
Query 23824 GTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGT 23883
|| ||||| || |||| || || ||||| ||||||| ||||||| ||||| |
Sbjct 379278 GTTGTCTCCCCAGATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAAT 379337
Query 23884 GACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATA 23943
||||| | || | ||||| || || | || ||| || || ||||| || | |||
Sbjct 379338 CTTGCCGTCCAGCTTCAGGAGATACGATCGCTCCAGCGTCTTGAAACCAAAGTACTGATA 379397
Query 23944 GTTAAAGTCACGATCGTGCACTATGGCCGA 23973
||| ||||| | |||| || ||||| ||
Sbjct 379398 GTTGAAGTCTCTCTCGTAAACAATGGCAGA 379427
>seq31
Length=345369
Score = 143 bits (158), Expect = 2e-29
Identities = 172/234 (74%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
||| ||||||||| ||||||||||| || || || || || |||||| |||| || ||
Sbjct 217618 CAACCATGCAAATCTTCGTAAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGT 217677
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| || |||| | |||| | ||||| || ||| |||||||| ||| | |||||||
Sbjct 217678 CTTCTGACACTATCGACAATGTCAAGTCGAAAATTCAAGACAAGGAGGGCATCCCGCCCG 217737
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||||||||| | || || ||||| |||||| | ||||| || || ||| |
Sbjct 217738 ACCAGCAGCGCTTGATCTTTGCTGGTAAACAGCTCGAAGATGGCCGCACCCTGGCCGACT 217797
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
| ||||| || || ||||| || ||||||||||| ||| | ||| | |||||||
Sbjct 217798 ACAACATCCAGAAGGAATCCACCCTTCATCTGGTTCTTCGCCTGCGTGGCGGTA 217851
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| || || || || || |||||| | || || || | |||
Sbjct 217851 ATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGTCTTCC 217910
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| || ||| |||||||| ||| | ||||||||||||
Sbjct 217911 GACACCATCGACAATGTCAAGGCGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 217970
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| || | || || ||||||||||| | |||||| || || ||| || |||
Sbjct 217971 CAACGCTTGATCTTTGCTGGCAAACAACTCGAAGACGGCCGCACCCTGGCCGACTACAAC 218030
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| || || ||||| || || ||||| || || | ||| | |||||
Sbjct 218031 ATCCAGAAGGAATCCACCCTCCATCTCGTTCTGCGCCTGCGCGGCGG 218077
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| || || ||||| ||||| || ||||| ||||| | || ||||| ||||
Sbjct 218078 CATGCAAATCTTTGTCAAGACACTGACGGGAAAAACAATCACGCTGGAAGTTGAGTCGTC 218137
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | ||||| || || ||||||||||| | || ||||||||
Sbjct 218138 AGACACCATTGACAACGTCAAGTCGAAGATTCAAGACAAGGAAGGGATTCCCCCCGACCA 218197
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| || || || || ||||| ||| | || ||| || || ||| || ||
Sbjct 218198 GCAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACATTGGCCGACTACAA 218257
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || || || || || ||||| ||
Sbjct 218258 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCT 218290
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| |||||||| ||||| ||||| || || || ||||| |||| || || ||||
Sbjct 218306 CATGCAGATTTTCGTCAAGACGCTGACCGGGAAGACCATCACGCTCGAGGTGGAGTCGTC 218365
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | || | || || || ||| |||||||| ||| | || || || ||
Sbjct 218366 TGATACCATTGATAATGTGAAGTCGAAAATTCAAGACAAGGAGGGCATTCCTCCTGATCA 218425
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| || || || ||||| || ||| | || || | || | ||| || ||
Sbjct 218426 GCAGCGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGAACCCTAGCCGACTACAA 218485
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||||||| || ||||| | || ||||| ||
Sbjct 218486 CATTCAAAAGGAGTCGACGTTGCACCTGGTGCT 218518
>seq3
Length=1259731
Score = 96.9 bits (106), Expect = 3e-15
Identities = 116/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| || || || || || |||||| |||| || || |
Sbjct 603195 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTCGAGGTGGAGTCT 603136
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||||||| |||| | ||||| | || ||||||||| ||| | || ||||||
Sbjct 603135 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 603076
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||||| || || || |||||||| ||| | || ||
Sbjct 603075 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGA 603038
>seq25
Length=408197
Score = 89.7 bits (98), Expect = 5e-13
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260
||| || ||||| ||||| ||||| || ||||| |||| || || | ||||||| |
Sbjct 312592 TTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGAGGTCGAGTCCTCCGACACGAT 312533
Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320
||| | ||||| | || ||||||||| ||| | || ||||||||||||||| |
Sbjct 312532 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTTT 312473
Query 31321 AATATTCGCTGGCAAACAGTTGGAAGA 31347
|| || |||||||| ||| |||| ||
Sbjct 312472 GATCTTTGCTGGCAAGCAGCTGGAGGA 312446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445765625480880
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