Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 524 7e-144 seq31 143 2e-29 seq3 96.9 3e-15 seq25 89.7 5e-13 >seq1 Length=1559860 Score = 524 bits (580), Expect = 7e-144 Identities = 1265/1890 (67%), Gaps = 42/1890 (2%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 || ||| || || ||||| |||| | ||||| | || ||||| | || |||||||| Sbjct 377559 CTGGTCAACGGTGAACTGGATGGGGGCCGCGGCGGCTTGCGTGCGCAAGTAGTACATGCC 377618 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 ||||| ||||||| ||||||| || ||| || |||||||| | || || | || Sbjct 377619 AGTCTTGAGACCCAGCTTCCACCCGGCAAAGTGCATCGACGTGATCTTGCCCATGGTTGG 377678 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | ||||| | |||| ||||| ||| |||||||| || || || |||||||| Sbjct 377679 GTCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCGGC 377738 Query 22285 CATATTTATCA-ATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 ||| | | || ||| |||| ||| |||||||| || ||||||||||| | | | || Sbjct 377739 CATCTGCACCACATG-ACGCTGCGAAATTTCCCAGACCGTCTTGTACAGAGCCTTTACCT 377797 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 | || || ||| |||||| || ||||| | | ||||| ||| || | Sbjct 377798 CGCCGGGAATGTTGGGGATGTTCTGGATCGAGCCGTTCTCGGCAATGATGCGATTCTTCA 377857 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAG--ATGACGGTTCACCAC 22461 | | || ||||| ||| ||| || | ||| |||| || ||| |||| || || Sbjct 377858 TGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATG--GGTTGACGAC 377915 Query 22462 TTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGA 22521 || |||||||| | || |||||| || |||||||||||||| ||| | || ||||| | Sbjct 377916 CTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCTCGAAGCA 377975 Query 22522 TTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGA 22581 || ||||| ||||| ||||| | || || || || ||||| ||||| | ||| ||||| Sbjct 377976 CTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCAGCAGCGA 378035 Query 22582 GTTTCTCAAGCCGTGCT--TTGAAATTTTACTC-TTGAGC--ATCGACCAGTCCCACAGA 22636 ||| | | ||||||| |||| | | ||| ||||| ||| ||| ||||||| Sbjct 378036 GTTGCGAATCCCGTGCTCCTTGA---TCTGCTCCTTGAGGGAATC--CCACTCCCACAAG 378090 Query 22637 TCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGG-GCT 22695 |||||||||||||| || |||||| || | |||| | ||| | ||||| | | Sbjct 378091 TCGGACGGCGTCACGTT---CCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGGAGAT 378147 Query 22696 GCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGCCTCCAACG 22754 |||| | |||| ||| ||||| | | ||| || || || | |||| ||| | Sbjct 378148 CCCTT-GAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTC-CACCGACGCCGTCAAGG 378205 Query 22755 CGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCG---GCGGCGGCGACGCTTT 22811 || ||| || || ||||| || || | |||||||| ||| || ||| || || Sbjct 378206 CGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGG-GAGACT-- 378262 Query 22812 CGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCG 22871 | | ||||| || | | | ||| ||||| |||| || ||||| || | ||| || | Sbjct 378263 CAAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATGG 378322 Query 22872 GTCGGTTTTTCAGATTCGACACTTT--TGCCTCGGGCAAAGGATACCAATTCGAATCGAT 22929 | || | || || | || ||| || | | || || || ||||| Sbjct 378323 GACGATGCCGCATGTTG--CTGTTGCGTGCTTCTTGGACGGGGTAGTGGTTGACGTCGAT 378380 Query 22930 TGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTA 22989 | |||| | |||| | || | || | | |||||||| Sbjct 378381 GATCTTGTTGAGATTTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGAAGTCGTA 378440 Query 22990 AACGCCC-GATTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGC 23046 ||| | | ||| | ||||| | | ||| | |||||||| ||||| ||||| Sbjct 378441 CTTGCCTTGGTCGTAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGACGGC 378500 Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||||| || || |||||| | ||| ||||| || || ||| | || || Sbjct 378501 AACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAATGGT 378560 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| || |||||||||| || | ||||| ||||||||| ||||| | || | Sbjct 378561 TCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGGGGTT 378620 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG 23226 ||| |||||| ||| | ||||| ||||| ||||| |||| ||| | | ||| Sbjct 378621 GCCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGGGCGCGGATT-GTCT 378679 Query 23227 CACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAAC 23285 || | | |||||| ||||||||||| ||||| || ||||| ||| | ||||| | Sbjct 378680 TGCGGCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGTAGC 378739 Query 23286 AGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTG--AGTCATTTTC 23343 ||||||| || || || ||| | || |||||||| |||| | | | || || || Sbjct 378740 AGTCGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGGGTCCAG-TCGCCATTC-TTCTC 378797 Query 23344 AACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCAC 23403 || || |||| || || || || ||||| || || ||| || ||||| ||||| || Sbjct 378798 GACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGAC 378857 Query 23404 CTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGG 23463 ||||| |||||| ||||||| | | ||| | || || || || || || ||||| || Sbjct 378858 TTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGG 378917 Query 23464 CTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGC 23523 ||| ||||| | ||| || |||||||||| ||| |||||||| || |||||||| | ||| Sbjct 378918 CTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGC 378977 Query 23524 CGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGC 23583 ||||||||| | |||| ||||| || |||| ||||| || | |||| ||| || Sbjct 378978 AGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGC 379037 Query 23584 CACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTT 23643 | || || | || |||| | ||| |||| | || || || ||| || ||| Sbjct 379038 AATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTT 379097 Query 23644 CGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGT 23703 || ||||| ||||| || ||||||||||||||||||||||||||||| || || | Sbjct 379098 AGAAATCATGGCGCAAGTCTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCAT 379157 Query 23704 CGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGG 23763 |||| | ||| ||||| || | || | ||||| | || ||| || || || Sbjct 379158 GTCGACGAGGAAGCACGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGG 379217 Query 23764 GCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAAT 23823 |||||| || ||| || | | ||||| || ||||| || || | | || ||||| Sbjct 379218 TGAGGCGTGGGTGAAGAATTTACTGGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAAT 379277 Query 23824 GTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGT 23883 || ||||| || |||| || || ||||| ||||||| ||||||| ||||| | Sbjct 379278 GTTGTCTCCCCAGATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAAT 379337 Query 23884 GACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATA 23943 ||||| | || | ||||| || || | || ||| || || ||||| || | ||| Sbjct 379338 CTTGCCGTCCAGCTTCAGGAGATACGATCGCTCCAGCGTCTTGAAACCAAAGTACTGATA 379397 Query 23944 GTTAAAGTCACGATCGTGCACTATGGCCGA 23973 ||| ||||| | |||| || ||||| || Sbjct 379398 GTTGAAGTCTCTCTCGTAAACAATGGCAGA 379427 >seq31 Length=345369 Score = 143 bits (158), Expect = 2e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| ||||||||| ||||||||||| || || || || || |||||| |||| || || Sbjct 217618 CAACCATGCAAATCTTCGTAAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGT 217677 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || |||| | |||| | ||||| || ||| |||||||| ||| | ||||||| Sbjct 217678 CTTCTGACACTATCGACAATGTCAAGTCGAAAATTCAAGACAAGGAGGGCATCCCGCCCG 217737 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| | || || ||||| |||||| | ||||| || || ||| | Sbjct 217738 ACCAGCAGCGCTTGATCTTTGCTGGTAAACAGCTCGAAGATGGCCGCACCCTGGCCGACT 217797 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || ||||| || ||||||||||| ||| | ||| | ||||||| Sbjct 217798 ACAACATCCAGAAGGAATCCACCCTTCATCTGGTTCTTCGCCTGCGTGGCGGTA 217851 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || |||||| | || || || | ||| Sbjct 217851 ATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTGGAGGTGGAGTCTTCC 217910 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || ||| |||||||| ||| | |||||||||||| Sbjct 217911 GACACCATCGACAATGTCAAGGCGAAAATCCAAGACAAGGAGGGCATCCCGCCCGACCAG 217970 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || | || || ||||||||||| | |||||| || || ||| || ||| Sbjct 217971 CAACGCTTGATCTTTGCTGGCAAACAACTCGAAGACGGCCGCACCCTGGCCGACTACAAC 218030 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || ||||| || || ||||| || || | ||| | ||||| Sbjct 218031 ATCCAGAAGGAATCCACCCTCCATCTCGTTCTGCGCCTGCGCGGCGG 218077 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| ||||| || ||||| ||||| | || ||||| |||| Sbjct 218078 CATGCAAATCTTTGTCAAGACACTGACGGGAAAAACAATCACGCTGGAAGTTGAGTCGTC 218137 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || || ||||||||||| | || |||||||| Sbjct 218138 AGACACCATTGACAACGTCAAGTCGAAGATTCAAGACAAGGAAGGGATTCCCCCCGACCA 218197 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || ||||| ||| | || ||| || || ||| || || Sbjct 218198 GCAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACATTGGCCGACTACAA 218257 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || || || ||||| || Sbjct 218258 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCT 218290 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| ||||| || || || ||||| |||| || || |||| Sbjct 218306 CATGCAGATTTTCGTCAAGACGCTGACCGGGAAGACCATCACGCTCGAGGTGGAGTCGTC 218365 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || || || ||| |||||||| ||| | || || || || Sbjct 218366 TGATACCATTGATAATGTGAAGTCGAAAATTCAAGACAAGGAGGGCATTCCTCCTGATCA 218425 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || ||||| || ||| | || || | || | ||| || || Sbjct 218426 GCAGCGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGAACCCTAGCCGACTACAA 218485 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||||| || ||||| | || ||||| || Sbjct 218486 CATTCAAAAGGAGTCGACGTTGCACCTGGTGCT 218518 >seq3 Length=1259731 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || || |||||| |||| || || | Sbjct 603195 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACCATCACCCTCGAGGTGGAGTCT 603136 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || |||||| Sbjct 603135 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 603076 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || || |||||||| ||| | || || Sbjct 603075 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGA 603038 >seq25 Length=408197 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 ||| || ||||| ||||| ||||| || ||||| |||| || || | ||||||| | Sbjct 312592 TTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTCGAGGTCGAGTCCTCCGACACGAT 312533 Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320 ||| | ||||| | || ||||||||| ||| | || ||||||||||||||| | Sbjct 312532 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTTT 312473 Query 31321 AATATTCGCTGGCAAACAGTTGGAAGA 31347 || || |||||||| ||| |||| || Sbjct 312472 GATCTTTGCTGGCAAGCAGCTGGAGGA 312446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765625480880