Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq32 116 7e-21 >seq32 Length=314566 Score = 116 bits (128), Expect = 7e-21 Identities = 293/438 (67%), Gaps = 13/438 (3%) Strand=Plus/Minus Query 101910 AACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCA 101969 ||| | | |||||||| || || || || || |||||||| |||||||||||||| |||| Sbjct 225404 AACGATTGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCATTCGCGTCCA 225345 Query 101970 TTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTT 102029 | || ||| ||||||| | || | |||| || || |||| ||| || || |||| | Sbjct 225344 TCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCAAACGAACTCATAT 225285 Query 102030 CTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTG 102089 | | ||||| ||| | || ||||||||||||| ||||| | | | | Sbjct 225284 CCCGTGACGAGGGTTTGCACACCGACTTTGCATGCCTGCTG------CACTCTCATCTCA 225231 Query 102090 ATACCCCATCAAG--AG-AAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAAC 102146 | | |||| || ||| || | ||||| |||| || |||||| ||||| | Sbjct 225230 AGCAAAGAGCAAGCAAGCAAATCATCCAAGAAATCATCACCGATGCCGTCACCATTGAGC 225171 Query 102147 AAGAATTTCTCACAGTTTCCCTGCCTGTTAAAT-TAGTGGGAATGAACTGCAAGTTGATG 102205 |||| || || || | | ||||| || | | | || ||||||| || ||||| Sbjct 225170 AAGATTTCCTGACGGAGGCTCTGCC-GTGCGCTCTTCTCGGCATGAACTCCACACTGATG 225112 Query 102206 AGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAAT-GGGACTAGAAAAGCA 102264 | || ||||| ||||| || || || || ||||||| | |||| | |||||| Sbjct 225111 AAGCAATACATCGAATTCGTTGCCGACCGCCTGTTGGTTGCTCTCGGGAAT-GAAAAGGT 225053 Query 102265 CTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAA 102324 || || | || || || || ||||| ||||| ||||| | |||||||| Sbjct 225052 GTACAAGACAGCGAATCCGTTTGATTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAA 224993 Query 102325 CTTTTTTGAAAAGAGAGT 102342 ||||||||| ||| |||| Sbjct 224992 CTTTTTTGAGAAGCGAGT 224975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989582237612745