Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq32 96.9 4e-15 >seq32 Length=314566 Score = 96.9 bits (106), Expect = 4e-15 Identities = 222/333 (67%), Gaps = 5/333 (2%) Strand=Plus/Plus Query 33804 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33863 ||||| |||||||| ||||| || ||| | || || | ||| || |||||| Sbjct 225542 GTTTCAATGGCATTGAAGAGGTAATTTCGCTGCGCGTGCTCCTTGATATACGTGTCGATC 225601 Query 33864 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33923 || | | |||| | || ||||| || || || || ||||| || ||||||||||| Sbjct 225602 AATAAAGAATACGTCTCGGAATGGATATTCTCCATCATGATCTGGAACCCGTAGAAACAA 225661 Query 33924 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 33983 | || || | || |||||| || | || || || | | ||||| || || || Sbjct 225662 CGGGCTTCAGGAACCTGCACCTCGCCGCTGAACCGCTCAACCAGGTTTTCGTTGACGATG 225721 Query 33984 CCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 34043 ||||| ||| ||||| || ||||| | || || ||||| ||||| || | ||| Sbjct 225722 CCATCCGAGGCAGCAAAGAATGCCAAGATGTGAGAAATGAAATACTTTTCATC-GTCGTT 225780 Query 34044 ----AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 34099 | |||||||| || | | ||| || || | || | ||||| ||||||| || Sbjct 225781 CAGGCGATTATTCCAGTCGTGCAAATCCTTGGACAGGTCTATCTCTTCGGCTGTCCAGAA 225840 Query 34100 TGATGCCTCTGCCTTTTTATACATATTCCAGAT 34132 || ||||| ||||| || ||||| | ||| || Sbjct 225841 AGAAGCCTCAGCCTTCTTGTACATTTGCCATAT 225873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816505691920