Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq8 145 7e-30
>seq8
Length=988098
Score = 145 bits (160), Expect = 7e-30
Identities = 272/391 (70%), Gaps = 8/391 (2%)
Strand=Plus/Plus
Query 21110 CACGTAAAACTGACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168
|||||| ||||| | |||| ||||| ||||| || || ||||| | |||||| |
Sbjct 209012 CACGTAGAACTG-CGCAAACACGTGGCAAGGCGGCAGCGCCATGAGGTGCAGGTCCCGCG 209070
Query 21169 GGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCA 21228
||||||||||| ||| | ||| | || |||| |||| | || | || | |
Sbjct 209071 CGTTCCACGCGCTCATGATGATCCTGCGGTCGTACGGCCTGGTCTTGAGCTTGTCGATGA 209130
Query 21229 CGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCG 21288
||| |||||||| ||||||| ||| ||||| | | ||| || |||||| |
Sbjct 209131 CGTCGGCGAGCTGGTCGACCCCCTTGCCCGTGTAGTCCGTCTTGGCGTCCACGTACTCTG 209190
Query 21289 CCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCC 21348
| ||||| || | ||||||||| ||||| || || || || |||||||| ||||| |
Sbjct 209191 CGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCGAGGTCGCCCTCCTCGCGGTGCG 209250
Query 21349 CGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCG 21407
| |||| | || | | | || |||| ||||||| ||||||| || || ||||||
Sbjct 209251 TCAGGCCCAG-GCTGTCGAGGAACTCGCGCGACCCGTTGCCGTCCCATATCTTGACGCCG 209309
Query 21408 -CGGCGC-GACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCA 21465
|| ||| || || || |||||||||| |||| ||| |||||||||| ||| | |
Sbjct 209310 ACGTCGCTGAGAGCCCG--GGAGTCGGTGTTGCCCTCGATGAACCACAGCAGCTCGGCGA 209367
Query 21466 CGACGCCCCTCCAAAACACCCTTTTGGTGGT 21496
||||| | | | |||||||| || |||||
Sbjct 209368 CGACGGCGCGCAGAAACACCCGCTTCGTGGT 209398
Score = 100 bits (110), Expect = 2e-16
Identities = 113/149 (76%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 20945 GTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGG-TCAGGCCCGTGACGT 21003
||| ||||| ||||| |||| | ||| | | || ||||| ||||| | ||||
Sbjct 208754 GTAGACGTGCGCGTCGCCCATGACGTGGGTCAGG-CTGCCGGGTATCAGGTCGCACACGT 208812
Query 21004 GAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCA 21063
| || | || | ||| ||||| ||||||||||| ||||| ||||| || ||||| ||||
Sbjct 208813 GCGCCACCATGTGCGTGAGGAGCGCGTAGCTGGCAATGTTGAACGGCACGCCGAGACCCA 208872
Query 21064 TGTCGGCGGACCTCTGGTACAGCTGGCAG 21092
||||| ||||| ||||||||||||||||
Sbjct 208873 TGTCGCAGGACCGCTGGTACAGCTGGCAG 208901
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427775275320720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |