Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq31 111 2e-19 >seq31 Length=345369 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | ||| | |||| || || || || || ||||| || ||| | Sbjct 217849 CCGCCACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCC 217790 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||||||||||||||||||| |||||| || ||||| ||||| || Sbjct 217789 AGGGTGCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGG 217730 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| |||| | || | | || | ||||| | | |||||| Sbjct 217729 ATGCCCTCCTTGTC-TTGAATTTTCGACTTGACATTGTCGATAGTGTCAGAAGACTCCAC 217671 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||| ||||| | || |||||||| |||||||| Sbjct 217670 CTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCAT 217623 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | || | || | ||| | ||| ||||| ||||||||||| || ||| Sbjct 218536 TGGCCACCACGCAGGCGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCG 218477 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || ||| || || ||||| ||||||||| |||| || || |||||||| ||| Sbjct 218476 GCTAGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGA 218417 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || ||||| || ||||| ||| |||| | || | | || | || || | | ||| Sbjct 218416 GGAATGCCCTCCTTGTC-TTGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTC 218358 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| | || | ||||| ||||||| ||| || ||||| || ||||| Sbjct 218357 CACCTCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 218307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063138088800