Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1 149 8e-31
seq32 100 4e-16
>seq1
Length=1559860
Score = 149 bits (164), Expect = 8e-31
Identities = 444/679 (65%), Gaps = 16/679 (2%)
Strand=Plus/Plus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
||||| ||||| || || ||||| | | ||| || |||| | | || || |||||
Sbjct 378751 CCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATG 378810
Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093
||||| || || ||||| || || | || || || | | | ||||| || ||
Sbjct 378811 AAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCG 378870
Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153
|||||| | ||||| ||||| | | | ||| | ||||| || |||| ||| |||
Sbjct 378871 TGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATG 378930
Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213
|| | | ||||| || ||||| || || || || | |||||| || ||||| || |
Sbjct 378931 GCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAG 378990
Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273
|||| || ||| |||| | || || || | || ||||| |||| || ||| |||
Sbjct 378991 ACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCG 379050
Query 72274 CTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 72333
| |||||||| | | || || || || || ||||||||||| || | |||
Sbjct 379051 GTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCG 379110
Query 72334 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 72393
|| || | || || ||||||||||| || || || ||| |||||| | || ||
Sbjct 379111 CAAGTCTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAG 379170
Query 72394 CAGCTAGACATTTGGTGAC---GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450
|| | || | | |||| || || ||||| || || | |||||| || |||||
Sbjct 379171 CA-CGAGGAA--AGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGG 379227
Query 72451 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTC----AATAGCTGATTCTATATC-CC 72505
|| || |||| |||| || ||||| || || | ||| | | | | || ||
Sbjct 379228 GTGAAGAATTTACTGGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGT-TGTCTCC 379286
Query 72506 ATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGT 72565
|||| || || || |||||||| | ||| |||||||||| ||| || ||||||
Sbjct 379287 CCAGATG----CCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGC 379342
Query 72566 TATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 72625
| | |||| | || ||| |||| || || |||||||| || | || |
Sbjct 379343 CGTCCAGCTTCAGGAGATACGATCGCTCCAGCGTCTTGAAACCAAAGTACTGATAGTTGA 379402
Query 72626 AGTCTCGTTCGTAAATAAT 72644
|||||| ||||||| |||
Sbjct 379403 AGTCTCTCTCGTAAACAAT 379421
>seq32
Length=314566
Score = 100 bits (110), Expect = 4e-16
Identities = 223/333 (67%), Gaps = 5/333 (2%)
Strand=Plus/Plus
Query 42287 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATC 42346
||||| |||||||| ||||| || ||| | || || | ||| || ||||||
Sbjct 225542 GTTTCAATGGCATTGAAGAGGTAATTTCGCTGCGCGTGCTCCTTGATATACGTGTCGATC 225601
Query 42347 AAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 42406
|| | | |||| | || ||||| || || || || ||||| || |||||||||||
Sbjct 225602 AATAAAGAATACGTCTCGGAATGGATATTCTCCATCATGATCTGGAACCCGTAGAAACAA 225661
Query 42407 CTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATT 42466
| ||| || | |||||| || || | || || ||| | | |||||||| || ||
Sbjct 225662 CGGGCTTCAGGAACCTGCACCTCGCCGCTGAACCGCTCAACCAGGTTTTCGTTGACGATG 225721
Query 42467 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT 42526
|| || ||| ||||| || ||||| | || || ||||| ||||| | || |||
Sbjct 225722 CCATCCGAGGCAGCAAAGAATGCCAAGATGTGAGAAATGAAATACTTTTCAT-CGTCGTT 225780
Query 42527 AA----TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAA 42582
| |||||||| || | | ||| || || | |||| ||||| | ||||| ||
Sbjct 225781 CAGGCGATTATTCCAGTCGTGCAAATCCTTGGACAGGTCTATCTCTTCGGCTGTCCAGAA 225840
Query 42583 TGATGCTTCTGCCTTTTTATACATATTCCAGAT 42615
|| || || ||||| || ||||| | ||| ||
Sbjct 225841 AGAAGCCTCAGCCTTCTTGTACATTTGCCATAT 225873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138033895640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |