Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_005832.1
Length=106332
Score E
Sequences producing significant alignments: (Bits) Value
seq8 104 2e-17
seq36 86.0 4e-12
>seq8
Length=988098
Score = 104 bits (114), Expect = 2e-17
Identities = 169/239 (71%), Gaps = 6/239 (3%)
Strand=Plus/Plus
Query 25738 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 25797
||||| || |||||| | |||| |||||| | | | |||| ||||||||| || ||
Sbjct 209139 AGCTGGTCGACCCCCTTGCCCGTGTAGTCCGTCTTGGCGTCCACGTACTCTGCGCCAAAG 209198
Query 25798 TACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCC 25857
| || ||||||||| ||||| || || || ||||| || || || | |||| | ||||
Sbjct 209199 TGCCGCCACTGGAAGCCGTAGACGGGGCCGAGGTCGCCCTCCTCGCGGTGCGTCAGGCCC 209258
Query 25858 CTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCC--CTTCTCGG 25915
| || | || || | || || ||| ||||||| ||||| || || | || | |
Sbjct 209259 AGGCTGTCGAGGAACTCGCGCGACCCGTTGCCGTCCCATATCTTGACGCCGACGTCGCTG 209318
Query 25916 AGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAACCACAGCAGCTCCGCCGTGACGGC 25973
||||| | ||||| ||| ||||| || ||||||||||||||| || ||||||
Sbjct 209319 AGAGCCCG--GGAGTCGGTGTTGCCCTC-GATGAACCACAGCAGCTCGGCGACGACGGC 209374
>seq36
Length=277325
Score = 86.0 bits (94), Expect = 4e-12
Identities = 132/181 (73%), Gaps = 8/181 (4%)
Strand=Plus/Minus
Query 44368 CGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT- 44426
||||||||| || | |||| ||| | ||| |||| |||||||||||||||||
Sbjct 33616 CGTCAAGGTCCGGGTTCGGACAACCAAGATCCCGCAGATTGGCGACAAGTTTGCGTCTCG 33557
Query 44427 TCACGGCGCAAAAGGGGACA--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCG- 44483
|||||| |||||||| || || | | ||| | | | ||||||||||||||||
Sbjct 33556 TCACGGA-CAAAAGGGCACGATTGGTGTGACGTACCGGC--AGGAGGACATGCCCTTTAC 33500
Query 44484 ACAAAAACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 44543
|| || ||||| ||| ||| ||||||||||||| |||||| |||| || | ||||
Sbjct 33499 ACGGGAA-GGGGTCACGCCAGACATCATCATCAACCCGCACGCCATTCCGTCGCGAATGA 33441
Query 44544 C 44544
|
Sbjct 33440 C 33440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 340137023785647
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |