Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq31 89.7 5e-13 seq25 86.0 6e-12 seq3 82.4 7e-11 >seq31 Length=345369 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||| || ||| || ||| | || || || ||||| || Sbjct 218047 GTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCTTCGAGTTGTTTGCCA 217988 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| || | |||||| || || || || || || ||||| | ||||| |||||| Sbjct 217987 GCAAAGATCAAGCGTTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGGATTTTCGCCTTG 217928 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | ||| ||||| | || || || | |||||||| || ||||| || || Sbjct 217927 ACATTGTCGATGGTGTCGGAAGACTCCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTC 217868 Query 94991 TTCACAAAGATCTGCAT 95007 || || ||||||||||| Sbjct 217867 TTGACGAAGATCTGCAT 217851 >seq25 Length=408197 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||||||| || || ||||||| || | ||||| || ||||| || || || || Sbjct 312445 ATCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTT 312504 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || | |||||| | ||| ||||| | | ||||| || | |||||| Sbjct 312505 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCGAGCGTGAT 312564 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAA 94998 ||| || || || || || |||||||| Sbjct 312565 GGTCTTGCCCGTCAGGGTCTTCACAAA 312591 >seq3 Length=1259731 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||| || ||||| || | ||| || ||| || ||| | | Sbjct 602978 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 603037 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || ||||||| | || ||||| || || || || || || ||| Sbjct 603038 TCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 603097 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | |||||| | ||| ||||| | || || || | |||||| Sbjct 603098 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATG 603157 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || || || || |||||||| Sbjct 603158 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 603192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290421094040