Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq20 185 1e-42 seq93 145 1e-30 >seq20 Length=529978 Score = 185 bits (204), Expect = 1e-42 Identities = 204/269 (76%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| ||| || || |||||||| || ||||||||||| |||| Sbjct 339749 CGCCAAGCGTCACCGCAAGAT-TCTCCGCGACAACATCCAGGGCATCACCAAGCCTGCTA 339807 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| || |||||||| || ||||||||| | |||| || |||| ||||| | Sbjct 339808 TCCGACGTCTCGCCCGTCGTGGCGGTGTCAAGCGTATTTCTGCCATGATCTACGAAGAAA 339867 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| |||| | |||| |||||| || || |||| ||||| || ||| || | Sbjct 339868 CCCGTACTGTTCTCAAGACATTCCTCGAGGGTGTCATCCGAGATGCCGTCACCTACACTG 339927 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||||||||| || ||||| ||||||| || |||| || |||| Sbjct 339928 AGCACGCCAAGCGCAAGACTGTCACGTCGCTGGATGTCGTCTACGCCCTGAAGCGACAAG 339987 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || || ||||| ||||| Sbjct 339988 GCCGCACTCTGTACGGGTTTGGCGGTTAA 340016 >seq93 Length=61654 Score = 145 bits (160), Expect = 1e-30 Identities = 197/272 (72%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| | |||| ||||| || ||||| || |||||||| || || || Sbjct 11454 GCCAAGCGTCACCGCAAAA-TCTTACGAGACAATATCCAGGGCATCACCAAACCTGCAAT 11396 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| ||||||||||| || ||||||||| |||||| || | || ||||| | Sbjct 11395 TCGTCGTCTTGCTCGTCGTGGCGGGGTCAAGCGTATCTCTGCCATGATTTACGAAGAAAC 11336 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || ||| | |||| |||||| | || || | |||||| || ||||| || Sbjct 11335 CCGCACTGTACTTAAGACTTTCCTCGAAGGTGTCATTCGAGATGCTGTCACATATACAGA 11276 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || |||||||| ||||| || | ||| | || |||||||| || | || || Sbjct 11275 ACACGCCAAGCGTAAGACAGTCACGTCGCTTGATGTTGTGTATGCATTAAAGAGGCAGGG 11216 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 | | | ||||||| ||||| ||| || || Sbjct 11215 CAGAACTCTTTATGGGTTTGGTGGTTGATGTT 11184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075072911327