Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq1 403 5e-107
>seq1
Length=1559860
Score = 403 bits (446), Expect = 5e-107
Identities = 1079/1633 (66%), Gaps = 40/1633 (2%)
Strand=Plus/Minus
Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606
||||| |||||| | || || | | ||| || || || | | | ||| | || ||
Sbjct 379232 TTCACCCACGCCTCACCTACCCTCTTCAACGCGGGCACGCCTCAGTGTCAGCTTTCCTCG 379173
Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666
||||| || | | |||||||| || ||||||||| |||| ||||| || |||| |
Sbjct 379172 TGCTTCCTCGTCGACATGAAGGAAGACAGCATCGAGGGCATCTACGACACTCTCAAGACT 379113
Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725
|| || | ||||| || | || ||||| || || | | || ||||| |||||||
Sbjct 379112 TGCGCCATGATTTCTAAAATGGCCGGCGGTATCGGCCTGAACG-TCCACCGCATTCGTGC 379054
Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784
|| | | | ||||| |||||| || |||||| || | ||||||||||| |
Sbjct 379053 TACCGGATCCT-ACATTGCCGGCACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGC 378995
Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844
| || || |||| ||||| || ||||||||||| || || ||||| || || |
Sbjct 378994 GAGTCTTCAACAACACTGCCAGATACGTCGACCAAGGCGGCAACAAGCGACCGGGCGCCT 378935
Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904
| || || || || ||||| || |||||| | ||||| || ||||| ||| | || |
Sbjct 378934 TCGCCATCTACCTGGAGCCCTGGCACGCCGATGTCTTTGAATTCCTTGATCTCAGAAAGA 378875
Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964
|| || || |||||| | || || || || || ||| ||| || ||| | | ||||
Sbjct 378874 ACCACGGCAAGGAGGAAGTCCGCGCTCGCGACCTCTTCCTTGCGCTGTGGATCCCCGACC 378815
Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGAAT------TGGTCACTCTTTTGCCCACACG 364018
|| |||||||| || ||| |||||| ||| | ||| | ||||| |||
Sbjct 378814 TCTTCATGAAGCGTGTCGAG------AAGAATGGCGACTGGACCCTCATGTGCCCCAACG 378761
Query 364019 AATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATG 364078
|||| || || || |||| | || ||||| | || ||| | || |||||||| |
Sbjct 378760 AATGCCCTGGGCTCGCCGACTGCTACGGCGACGAGTTTGAGGCTTTGTATGAAAAGTACG 378701
Query 364079 AAT-CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATG 364137
| || ||| ||| || |||||||| | ||| |||||||| |||| | ||| |
Sbjct 378700 AGCGCGAAGGCCGTGGC-CGCAAGACAATCCGCGCCCAGAAGCTGTGGTACTCGATCCTC 378642
Query 364138 GATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAG 364197
|| | |||| ||||| || | |||| |||| ||||||| ||| |||||| | |||
Sbjct 378641 GAGGCTCAGACCGAGACTGGCAACCCCTTTATGCTGTACAAGGATCATTGCAACAGGAAG 378582
Query 364198 TCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGA 364256
||||||| || || | || || |||| |||| | ||||| || ||||||||||| ||
Sbjct 378581 AGCAACCAGAAGAACTTGGGAACCATTC-GCAGCTCCAACCTCTGCACCGAGATTATCGA 378523
Query 364257 ATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTT 364316
||| | || ||||||||| |||||| || |||||||| || | || || || || ||
Sbjct 378522 GTACTCGGCCCCCGACGAGGTTGCCGTCTGCAACCTTGCCTCCCTTGCCCTGCCCGCCTT 378463
Query 364317 TGT------AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGC 364370
||| | | || | | ||| ||| | || | ||||| ||| | ||
Sbjct 378462 TGTGGACTACGACCAAGGCAAGTACGACTTCCAAAAGCTGCACGACGTCACC-CGCGTGG 378404
Query 364371 TACT-TGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG-- 364426
| | | |||||| ||||| | |||||| || | || || | | ||||| ||
Sbjct 378403 TTGTCCGAAATCTCAACAAGATCATCGACGTCAACCACTACCCCGTCCAAGAAGCACGCA 378344
Query 364427 --AGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGT 364484
||| || ||||| ||||| || |||||| | ||||| || ||| | || ||||
Sbjct 378343 ACAGC-----AACATGCGGCATCGTCCCATTGGTGTCGGTGTTCAAGGCTTGGCCGACGC 378289
Query 364485 TTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGAT 364544
|| | ||| ||| | ||||| || || || ||||| | || || ||| ||||
Sbjct 378288 CTTCCTTGCGCTTCGCATGCCCTTTGAGTCTCCCGAGGCTCGCGAGCTGAACAAGCAGAT 378229
Query 364545 CTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGG 364604
||||| || || || ||||| |||| || ||| || |||| || ||||
Sbjct 378228 TTTTGAGACCATCTACCACGCCGCCTTGACGGCGTCGGTGGAGCTGGCCAAGGAGGAGGG 378169
Query 364605 AAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATG 364664
||||| || | |||| || || || | || | | |||||||| | ||
Sbjct 378168 TCCCTACTCCACGTTCAAGGGATCTCCGGCCTCTGAAGGCATCCTGCAGTTTGACATGTG 378109
Query 364665 GAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGC 364723
||| || ||||| || | | ||| | |||||| | || | | | | | ||| |||
Sbjct 378108 GAACGTGACGCCGTCCGACTTGTGGGAGTGGGATTCCCTCAAGGAGC-AGATCAAGGAGC 378050
Query 364724 ATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCC 364783
| || | ||||||||| || | ||||||||||||||||| || || | ||||| |
Sbjct 378049 ACGGGATTCGCAACTCGCTGCTGCTCGCGCCCATGCCCACGGCGTCCACGTCGCAGATTC 377990
Query 364784 TCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTT 364843
| || ||||||||||||||||| || | || ||| |||| || || || ||
Sbjct 377989 TGGGCAACAACGAGTGCTTCGAGCCCTACACGTCCAACATTTACCAGCGACGCGTCCTGG 377930
Query 364844 CCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGT 364903
| || || || | ||| || || | || |||||||||| |||| || ||||
Sbjct 377929 CGGGCGAGTTCCAGGTCGTCAACCCATGGCTTCTCAAGGATCTCGTCGACATGGGTCTGT 377870
Query 364904 GGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAG 364963
|| ||| ||||||||| ||||| |||| || || || | |||||||| ||
Sbjct 377869 GGTCAGACGCCATGAAGAATCGCATCATTGCCGAGAACGGCTCGATCCAGAACATCCCCA 377810
Query 364964 GATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTC 365023
|||| | || | ||| || | ||||| || || ||||||||||| ||| |
Sbjct 377809 ACATTCCCGGCGAGGTAAAGGCTCTGTACAAGACGGTCTGGGAAATTTCGCAGCGTCATG 377750
Query 365024 TCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTAT 365083
| | | ||||| ||||| |||||||| |||||| ||| |||||| | ||| |
Sbjct 377749 TGGTGCAGATGGCCGCCGACCGCGGTGCCTTTATCGACCAGTCCCAGTCTCTCAACATTC 377690
Query 365084 TCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCG 365143
||||| | |||||| | |||| | || || ||||| || ||||||||| |
Sbjct 377689 ACATGAAGGACCCAACCATGGGCAAGATCACGTCGATGCACTTTGCCGGGTGGAAGCTGG 377630
Query 365144 GTCTTAAGACAGG 365156
|||| ||||| ||
Sbjct 377629 GTCTCAAGACTGG 377617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303351278808698
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |