Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 403 5e-107 >seq1 Length=1559860 Score = 403 bits (446), Expect = 5e-107 Identities = 1079/1633 (66%), Gaps = 40/1633 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || || | | ||| || || || | | | ||| | || || Sbjct 379232 TTCACCCACGCCTCACCTACCCTCTTCAACGCGGGCACGCCTCAGTGTCAGCTTTCCTCG 379173 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | | |||||||| || ||||||||| |||| ||||| || |||| | Sbjct 379172 TGCTTCCTCGTCGACATGAAGGAAGACAGCATCGAGGGCATCTACGACACTCTCAAGACT 379113 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 || || | ||||| || | || ||||| || || | | || ||||| ||||||| Sbjct 379112 TGCGCCATGATTTCTAAAATGGCCGGCGGTATCGGCCTGAACG-TCCACCGCATTCGTGC 379054 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | | | ||||| |||||| || |||||| || | ||||||||||| | Sbjct 379053 TACCGGATCCT-ACATTGCCGGCACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGC 378995 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 | || || |||| ||||| || ||||||||||| || || ||||| || || | Sbjct 378994 GAGTCTTCAACAACACTGCCAGATACGTCGACCAAGGCGGCAACAAGCGACCGGGCGCCT 378935 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 | || || || || ||||| || |||||| | ||||| || ||||| ||| | || | Sbjct 378934 TCGCCATCTACCTGGAGCCCTGGCACGCCGATGTCTTTGAATTCCTTGATCTCAGAAAGA 378875 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || || || |||||| | || || || || || ||| ||| || ||| | | |||| Sbjct 378874 ACCACGGCAAGGAGGAAGTCCGCGCTCGCGACCTCTTCCTTGCGCTGTGGATCCCCGACC 378815 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGAAT------TGGTCACTCTTTTGCCCACACG 364018 || |||||||| || ||| |||||| ||| | ||| | ||||| ||| Sbjct 378814 TCTTCATGAAGCGTGTCGAG------AAGAATGGCGACTGGACCCTCATGTGCCCCAACG 378761 Query 364019 AATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATG 364078 |||| || || || |||| | || ||||| | || ||| | || |||||||| | Sbjct 378760 AATGCCCTGGGCTCGCCGACTGCTACGGCGACGAGTTTGAGGCTTTGTATGAAAAGTACG 378701 Query 364079 AAT-CGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATG 364137 | || ||| ||| || |||||||| | ||| |||||||| |||| | ||| | Sbjct 378700 AGCGCGAAGGCCGTGGC-CGCAAGACAATCCGCGCCCAGAAGCTGTGGTACTCGATCCTC 378642 Query 364138 GATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAG 364197 || | |||| ||||| || | |||| |||| ||||||| ||| |||||| | ||| Sbjct 378641 GAGGCTCAGACCGAGACTGGCAACCCCTTTATGCTGTACAAGGATCATTGCAACAGGAAG 378582 Query 364198 TCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGA 364256 ||||||| || || | || || |||| |||| | ||||| || ||||||||||| || Sbjct 378581 AGCAACCAGAAGAACTTGGGAACCATTC-GCAGCTCCAACCTCTGCACCGAGATTATCGA 378523 Query 364257 ATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTT 364316 ||| | || ||||||||| |||||| || |||||||| || | || || || || || Sbjct 378522 GTACTCGGCCCCCGACGAGGTTGCCGTCTGCAACCTTGCCTCCCTTGCCCTGCCCGCCTT 378463 Query 364317 TGT------AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGC 364370 ||| | | || | | ||| ||| | || | ||||| ||| | || Sbjct 378462 TGTGGACTACGACCAAGGCAAGTACGACTTCCAAAAGCTGCACGACGTCACC-CGCGTGG 378404 Query 364371 TACT-TGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG-- 364426 | | | |||||| ||||| | |||||| || | || || | | ||||| || Sbjct 378403 TTGTCCGAAATCTCAACAAGATCATCGACGTCAACCACTACCCCGTCCAAGAAGCACGCA 378344 Query 364427 --AGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGT 364484 ||| || ||||| ||||| || |||||| | ||||| || ||| | || |||| Sbjct 378343 ACAGC-----AACATGCGGCATCGTCCCATTGGTGTCGGTGTTCAAGGCTTGGCCGACGC 378289 Query 364485 TTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGAT 364544 || | ||| ||| | ||||| || || || ||||| | || || ||| |||| Sbjct 378288 CTTCCTTGCGCTTCGCATGCCCTTTGAGTCTCCCGAGGCTCGCGAGCTGAACAAGCAGAT 378229 Query 364545 CTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGG 364604 ||||| || || || ||||| |||| || ||| || |||| || |||| Sbjct 378228 TTTTGAGACCATCTACCACGCCGCCTTGACGGCGTCGGTGGAGCTGGCCAAGGAGGAGGG 378169 Query 364605 AAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATG 364664 ||||| || | |||| || || || | || | | |||||||| | || Sbjct 378168 TCCCTACTCCACGTTCAAGGGATCTCCGGCCTCTGAAGGCATCCTGCAGTTTGACATGTG 378109 Query 364665 GAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGC 364723 ||| || ||||| || | | ||| | |||||| | || | | | | | ||| ||| Sbjct 378108 GAACGTGACGCCGTCCGACTTGTGGGAGTGGGATTCCCTCAAGGAGC-AGATCAAGGAGC 378050 Query 364724 ATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCC 364783 | || | ||||||||| || | ||||||||||||||||| || || | ||||| | Sbjct 378049 ACGGGATTCGCAACTCGCTGCTGCTCGCGCCCATGCCCACGGCGTCCACGTCGCAGATTC 377990 Query 364784 TCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTT 364843 | || ||||||||||||||||| || | || ||| |||| || || || || Sbjct 377989 TGGGCAACAACGAGTGCTTCGAGCCCTACACGTCCAACATTTACCAGCGACGCGTCCTGG 377930 Query 364844 CCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGT 364903 | || || || | ||| || || | || |||||||||| |||| || |||| Sbjct 377929 CGGGCGAGTTCCAGGTCGTCAACCCATGGCTTCTCAAGGATCTCGTCGACATGGGTCTGT 377870 Query 364904 GGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAG 364963 || ||| ||||||||| ||||| |||| || || || | |||||||| || Sbjct 377869 GGTCAGACGCCATGAAGAATCGCATCATTGCCGAGAACGGCTCGATCCAGAACATCCCCA 377810 Query 364964 GATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTC 365023 |||| | || | ||| || | ||||| || || ||||||||||| ||| | Sbjct 377809 ACATTCCCGGCGAGGTAAAGGCTCTGTACAAGACGGTCTGGGAAATTTCGCAGCGTCATG 377750 Query 365024 TCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTAT 365083 | | | ||||| ||||| |||||||| |||||| ||| |||||| | ||| | Sbjct 377749 TGGTGCAGATGGCCGCCGACCGCGGTGCCTTTATCGACCAGTCCCAGTCTCTCAACATTC 377690 Query 365084 TCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCG 365143 ||||| | |||||| | |||| | || || ||||| || ||||||||| | Sbjct 377689 ACATGAAGGACCCAACCATGGGCAAGATCACGTCGATGCACTTTGCCGGGTGGAAGCTGG 377630 Query 365144 GTCTTAAGACAGG 365156 |||| ||||| || Sbjct 377629 GTCTCAAGACTGG 377617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303351278808698