Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq31 140 3e-28
>seq31
Length=345369
Score = 140 bits (154), Expect = 3e-28
Identities = 165/219 (75%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054
||| |||||||| || |||||||| | ||||| || ||||||| |||| ||||||||
Sbjct 217619 AACCATGCAAATCTTCGTAAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTGGAGTC 217678
Query 25055 GTCTGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACC 25111
|||||||||||||| || || ||| | |||| ||| ||||| || || || || ||
Sbjct 217679 TTCTGACACTATCGA--CAATGTCAAGTCGAAAATTCA-AGACAAGGAGGGCATCCCGCC 217735
Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171
||||| ||||| | || ||||| || ||||| | ||||||| ||||| ||| |||
Sbjct 217736 CGACCAGCAGCGCTTGATCTTTGCTGGTAAACAGCTCGAAGATGGCCGCACCCTGGCCGA 217795
Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || || || |||||||| || ||| | || ||
Sbjct 217796 CTACAACATCCAGAAGGAATCCACCCTTCATCTGGTTCT 217834
Score = 120 bits (132), Expect = 3e-22
Identities = 156/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| |||| || ||| | ||||| | ||||| ||||||||
Sbjct 218079 ATGCAAATCTTTGTCAAGACACTGACGGGAAAAACAATCACGCTGGAAGTTGAGTCGTCA 218138
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || || | ||| | || | ||| ||||| ||||||||||| || |||||
Sbjct 218139 GACACCATTGACAACGTCAAGTCGAAGATTCAA-GACAAGGAAGGGATTCCCCCCGACCA 218197
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| |||| ||||||||||| || | || || | || || ||| ||| |||||
Sbjct 218198 GCAGCGACTTATCTTTGCCGGCAAGCAGCTCGAGGACGGACGAACATTGGCCGACTACAA 218257
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || ||||| || || | |||||
Sbjct 218258 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCT 218290
Score = 107 bits (118), Expect = 2e-18
Identities = 153/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||||| || ||||||| |||| ||||||||||||
Sbjct 218307 ATGCAGATTTTCGTCAAGACGCTGACCGGGAAGACCATCACGCTCGAGGTGGAGTCGTCT 218366
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || || ||||| | |||| ||| ||||| || || ||||| ||||| ||
Sbjct 218367 GATACCATTGATAATGTGAAGTCGAAAATTCA-AGACAAGGAGGGCATTCCTCCTGATCA 218425
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || ||||| || || || | || |||| | || | | ||| |||||
Sbjct 218426 GCAGCGACTCATCTTTGCTGGTAAGCAGCTTGAGGATGGGAGAACCCTAGCCGACTACAA 218485
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||||| || || ||| | || | |||||
Sbjct 218486 CATTCAAAAGGAGTCGACGTTGCACCTGGTGCT 218518
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327265915285
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |