Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq43 100 6e-16 seq21 96.9 7e-15 >seq43 Length=249011 Score = 100 bits (110), Expect = 6e-16 Identities = 186/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || || ||||| || |||||||||||||||||||| | |||||||| || | Sbjct 104734 GTCGGCTCCCTCTCGGGCGGGTGGAAGATGAAGCTGGCCCTGGCGCGCGCCATGCTCAGG 104793 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 || ||||| || || || || || ||||| ||||||||| | ||| ||||| | ||| Sbjct 104794 CGGGCCGACGTGCTGCTCCTCGACGAGCCCACCAACCACCTCGACGTGGCCAACATTGCC 104853 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | |||||| | | | | | | | ||| || || || |||||| Sbjct 104854 TGGCTGGAGAACTACCTCAGGACGCACCCGGACATCACCAGCCTGATCGTGTCGCACGAC 104913 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935 || |||||||| || ||| | | |||| ||||| |||| || ||||||| Sbjct 104914 TCGGGCTTCCTGGACAACGTCACGACCGACATCTACCACTACGAGCCCAACAAGAAGCTC 104973 Query 279936 TCCAAGCACATCGGCAACCTGTCTGCTTTCGTG 279968 || || ||||||||| | || || ||| Sbjct 104974 GCCTGCTACCGGGGCAACCTGGCCGCCTTTGTG 105006 >seq21 Length=508657 Score = 96.9 bits (106), Expect = 7e-15 Identities = 165/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || || | |||||||| ||||| ||||| || || ||||| || ||||| ||| | Sbjct 68208 CTCTCGTATCGCCGTCATTGGTCCCAACGGTGCCGGCAAATCTACTCTGATCAACGTCTT 68149 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCG-TTTGGAAGCATCCCAACATGCGGATGG 280278 ||| || ||| | || || | |||| | ||| |||| ||||| || || | Sbjct 68148 GACCGGTGAG-CTCATCCCGACGCAGGGTGAGATTTACCAGCACGAGAACATCCGTATCG 68090 Query 280279 CTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACC 280338 | ||| || |||||||| ||| ||||||||| ||||||||||||| ||| || | Sbjct 68089 CCTACATCAAGCAGCACGCCTTCGCCCACATCGATAACCACCTGGACAAGACCCCCTCCG 68030 Query 280339 AATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCGC 280391 | || ||||| ||||| | | || | ||| | |||| || || |||||||| Sbjct 68029 AGTATATTCAATGGCGAT-TCCAGACTGGCGAAGATCGCGAAACGATGGATCGC 67977 Score = 84.2 bits (92), Expect = 4e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762 ||||| || || || ||||| ||||| || ||| ||||| ||| | | || || Sbjct 67619 CACTCGCGTATGCGTGGTCTCTCTGGCGGTCAGCGTGTCAAGACTGTGCTGGCTGCTTGC 67560 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 || |||||||| |||||| |||| || ||||||||||||||||||||||| ||||| || Sbjct 67559 TC-GTGGCAACGACCTCACCTGATTGTGCTCGACGAGCCTACCAACTATCTTGACCGAGA 67501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834969486899