Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq43 100 6e-16
seq21 96.9 7e-15
>seq43
Length=249011
Score = 100 bits (110), Expect = 6e-16
Identities = 186/273 (68%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || || || ||||| || |||||||||||||||||||| | |||||||| || |
Sbjct 104734 GTCGGCTCCCTCTCGGGCGGGTGGAAGATGAAGCTGGCCCTGGCGCGCGCCATGCTCAGG 104793
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
|| ||||| || || || || || ||||| ||||||||| | ||| ||||| | |||
Sbjct 104794 CGGGCCGACGTGCTGCTCCTCGACGAGCCCACCAACCACCTCGACGTGGCCAACATTGCC 104853
Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875
||||| | | |||||| | | | | | | | ||| || || || ||||||
Sbjct 104854 TGGCTGGAGAACTACCTCAGGACGCACCCGGACATCACCAGCCTGATCGTGTCGCACGAC 104913
Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTC 279935
|| |||||||| || ||| | | |||| ||||| |||| || |||||||
Sbjct 104914 TCGGGCTTCCTGGACAACGTCACGACCGACATCTACCACTACGAGCCCAACAAGAAGCTC 104973
Query 279936 TCCAAGCACATCGGCAACCTGTCTGCTTTCGTG 279968
|| || ||||||||| | || || |||
Sbjct 104974 GCCTGCTACCGGGGCAACCTGGCCGCCTTTGTG 105006
>seq21
Length=508657
Score = 96.9 bits (106), Expect = 7e-15
Identities = 165/234 (71%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219
||| || || | |||||||| ||||| ||||| || || ||||| || ||||| ||| |
Sbjct 68208 CTCTCGTATCGCCGTCATTGGTCCCAACGGTGCCGGCAAATCTACTCTGATCAACGTCTT 68149
Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCG-TTTGGAAGCATCCCAACATGCGGATGG 280278
||| || ||| | || || | |||| | ||| |||| ||||| || || |
Sbjct 68148 GACCGGTGAG-CTCATCCCGACGCAGGGTGAGATTTACCAGCACGAGAACATCCGTATCG 68090
Query 280279 CTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACC 280338
| ||| || |||||||| ||| ||||||||| ||||||||||||| ||| || |
Sbjct 68089 CCTACATCAAGCAGCACGCCTTCGCCCACATCGATAACCACCTGGACAAGACCCCCTCCG 68030
Query 280339 AATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCGC 280391
| || ||||| ||||| | | || | ||| | |||| || || ||||||||
Sbjct 68029 AGTATATTCAATGGCGAT-TCCAGACTGGCGAAGATCGCGAAACGATGGATCGC 67977
Score = 84.2 bits (92), Expect = 4e-11
Identities = 92/120 (77%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762
||||| || || || ||||| ||||| || ||| ||||| ||| | | || ||
Sbjct 67619 CACTCGCGTATGCGTGGTCTCTCTGGCGGTCAGCGTGTCAAGACTGTGCTGGCTGCTTGC 67560
Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
|| |||||||| |||||| |||| || ||||||||||||||||||||||| ||||| ||
Sbjct 67559 TC-GTGGCAACGACCTCACCTGATTGTGCTCGACGAGCCTACCAACTATCTTGACCGAGA 67501
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027834969486899
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |