Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq31 188 1e-42 seq3 185 2e-41 seq43 98.7 2e-15 seq21 84.2 4e-11 >seq31 Length=345369 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || |||| |||| ||| || |||||||| || |||||||| || |||| Sbjct 218305 CCGCCGCGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 218246 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | || || || | |||||| ||||| || || |||| || |||||||| ||| Sbjct 218245 AATGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGA 218186 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||||||| | ||||||| || |||||||||| || || ||| Sbjct 218185 ATCCCTTCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTCAACT 218126 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| ||||||||||| || |||||||| || || ||||| Sbjct 218125 TCCAGCGTGATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCAT 218079 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| || | || || ||||| || || |||||||| || |||| Sbjct 218077 CCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCC 218018 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | || || || || || || | | ||| |||||||| || Sbjct 218017 AGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGG 217958 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| || || |||||||| ||||||||||| | || || || Sbjct 217957 ATGCCCTCCTTGTCTTGGATTTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACC 217898 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || ||||||||||||||||| |||||||| Sbjct 217897 TCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 217851 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| | ||| ||||| ||||| ||||| || |||| Sbjct 218533 CCACCACGCAGGCGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCT 218474 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || |||||||| || | |||||| || || || ||||||| || || || || ||| Sbjct 218473 AGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGA 218414 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||||||||| || | ||| || || ||||| || | || || || Sbjct 218413 ATGCCCTCCTTGTCTTGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACC 218354 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || || ||||||||||| |||||||| Sbjct 218353 TCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 218307 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| || || ||||| || || |||||||| || |||| Sbjct 217849 CCGCCACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCC 217790 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| || || || || || | | || |||||||| || Sbjct 217789 AGGGTGCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGG 217730 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||||||||| || | |||||| ||||| ||||| | || || || Sbjct 217729 ATGCCCTCCTTGTCTTGAATTTTCGACTTGACATTGTCGATAGTGTCAGAAGACTCCACC 217670 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| ||||| ||||||||||| ||||| || ||||| Sbjct 217669 TCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCAT 217623 >seq3 Length=1259731 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||||||| || ||| ||| || |||||||| || |||| Sbjct 602966 CCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 603025 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || ||||||| || |||||||| || Sbjct 603026 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 603085 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 603086 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 603145 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || |||||||||||||||||||| |||||||| Sbjct 603146 TCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 603192 >seq43 Length=249011 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 224961 GGTCCTGGCCTGAGGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGT 225020 |||| | ||| ||| || |||||||| | |||||||||||| ||| | |||||||| Sbjct 105415 GGTCGTCGCCGTTGGCGTAGCGCCACTGCAGGTACTGGTTGGGCGTCTTCTCCAGGTGCA 105356 Query 225021 TCTCAATATGGTGGAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCC 225080 |||| | || | | || ||||| | ||| | ||||||| |||||| |||||| Sbjct 105355 TCTCGACGTGCTCCAGGGCGTGCTGCTTGATGTAGCCGATGCGCAGGTTGGGGTGCTTCT 105296 Query 225081 ACACAGAGCCCCGAGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGC 225140 ||| ||| || || |||| || ||||| | ||||||||| ||| |||||| Sbjct 105295 CCACCTTGCCGGCGGTGGGCACCACCTCCCCCGTGAGCAGCTTGATGAGGGTACTCTTGC 105236 Query 225141 CCGCACCATTGGGGCCAATCACGCCAATCCGGGATGACA 225179 | || || ||||| || || ||| | | || || |||| Sbjct 105235 CGGCCCCGTTGGGCCCGATGACGGCGACGCGCGACGACA 105197 >seq21 Length=508657 Score = 84.2 bits (92), Expect = 4e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 ||||| || || |||| | ||||||| ||||||||||||| || || ||| ||| || Sbjct 68014 CGCCATTGAATATACTCGGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAGGCG 68073 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC-GG 225099 ||||| | ||| || || || ||||| |||| | | ||| | ||| || Sbjct 68074 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAAATCTCACCCTGCGTCGGG 68133 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || | ||| ||||| | ||| ||||| || |||| ||||| ||||| ||||| ||||| Sbjct 68134 ATGAG-CTCACCGGTCAAGACGTTGATCAGAGTAGATTTGCCGGCACCGTTGGGACCAAT 68192 Query 225160 CACGCCAATCCGGGA 225174 ||| | || || || Sbjct 68193 GACGGCGATACGAGA 68207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620798681080