Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq31 98.7 8e-16 seq25 82.4 6e-11 >seq31 Length=345369 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | ||| | ||| | || ||||| || || |||||||| ||| Sbjct 217852 ATACCGCCACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCG 217793 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| || ||||||||||| |||| | ||||| ||||| || Sbjct 217792 GCCAGGGTGCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGC 217733 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||| || || | | || | ||||| | || || Sbjct 217732 GGGATGCCCTCCTTGTCTTGAATTTTCGACTTGACATTGTCGATAGTGTCAGAAGACTCC 217673 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 || || | ||| | || || ||||| || || ||||| || || ||||||| Sbjct 217672 ACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCATGG 217621 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || |||||||||||||| ||| | || | ||| ||||| || ||||| Sbjct 218504 CGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCCTCAAGCTGCTTACC 218445 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| ||||||| ||||| || || ||||||||||| || ||||| ||| || || Sbjct 218444 AGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCTTGAATTTTCGACTT 218385 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| ||| || | || || || || | || | || || |||||||| || Sbjct 218384 CACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTCTTCCCGGTCAGCGT 218325 Query 114365 TTTTACAAAAATCTGCATG 114383 || || |||||||||||| Sbjct 218324 CTTGACGAAAATCTGCATG 218306 >seq25 Length=408197 Score = 82.4 bits (90), Expect = 6e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254 || ||||||||||| ||| || || || ||| || || || || ||||| |||| Sbjct 312413 TTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 312472 Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314 | |||||| ||||| ||||| ||||| || ||||| ||||| || | | || Sbjct 312473 AAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 312532 Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 | ||||||| ||| ||||| || | || | || ||||| ||||| || || |||||| Sbjct 312533 ATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAA 312592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420133688266068