Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1 471 8e-128 seq32 183 6e-41 >seq1 Length=1559860 Score = 471 bits (522), Expect = 8e-128 Identities = 1142/1709 (67%), Gaps = 49/1709 (3%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||||| ||| || ||||||| | || | || |||||||||||| |||||| Sbjct 377566 ACGGTGAACTGGATGGGGGCCGCGGCGGCTTGCGTGCGCAAGTAGTACATGCCAGTCTTG 377625 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || || ||| || | |||||| | ||| | ||| ||| | |||| Sbjct 377626 AGACCCAGCTTCCACCCGGCAAAGTGCATCGACGTGATCTTGCCCATGGT------TGGG 377679 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 || | | | ||| | ||||| |||||| |||||||| |||| | || || Sbjct 377680 TCCTTCATGT---GAATG---TTGAGAGACTGGGACTGGTCGATAAAGGCACCGCGGTCG 377733 Query 243917 GCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTG 243976 |||||||| | | | ||| || || || | |||||||||| | | ||| Sbjct 377734 GCGGCCATCTGCACCACATGACGCTGCGAAATTTCCCAGACCGTCTTGTACAGAGCCTTT 377793 Query 243977 AGGTGCTCGGGGAACCCTTCG-ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGT 244035 | | | | ||||| | | |||||||| | |||||| || | | | |||| | | Sbjct 377794 ACCT-CGCCGGGAATGTTGGGGATGTTCTGGATCGAGCCGTTCTCGGCAATGATGCGATT 377852 Query 244036 GCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCAC 244095 |||| || |||||| |||| | | || ||| || || ||| || Sbjct 377853 CTTCATGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGGGTTGAC 377912 Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 ||||| ||||| |||| ||| ||||| |||||||| | |||| || ||||||| Sbjct 377913 GACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCTCGAA 377972 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 || ||| |||||||||| ||||||| |||| ||| || |||||||||| | |||||| Sbjct 377973 GCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCAGCAG 378032 Query 244216 ACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCC 244275 ||| | | |||||| || ||| | |||| | ||| ||||||| | | Sbjct 378033 CGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCACTCCCACAAGTC 378092 Query 244276 CGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT-GCTGACGG 244334 || | | || |||| |||||||||||||||||| | || | | | ||| Sbjct 378093 GGACGG--CGTCACGTT-------CCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGG 378143 Query 244335 GGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTCG 244393 | | |||| | | || | ||||||||| || || |||||||| || | |||| Sbjct 378144 AGAT-CCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCGACGCCGTCA 378202 Query 244394 AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAG 244453 ||| |||||| |||||||||||| || ||| |||||||| ||||| |||| | | Sbjct 378203 AGG-CGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGAC 378261 Query 244454 GTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATG 244513 ||||| |||| | | | |||| ||||||||| || || || |||| || ||| Sbjct 378262 TCAAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATG 378321 Query 244514 GGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGAT 244572 || | || ||| ||||| | || || |||| | |||||||| |||| ||||||| Sbjct 378322 GGACGATGCCGCATGTTGCTGTTGCGTG-CTTCTTGGACGGGGTAGTGGTTGACGTCGAT 378380 Query 244573 CACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTA 244632 | ||||||||| || ||| | || |||| ||||||| |||| || |||||||| Sbjct 378381 GATCTTGTTGAGATTTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGAAGTCGTA 378440 Query 244633 CTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAG 244692 || | ||| || | || ||| ||||| || ||||| | | ||| || Sbjct 378441 CTTG-------CCTTGG---TCGTAGTCC--ACAAAGGCGGGCAGGGCAAGGGAGGCAAG 378488 Query 244693 GTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACT 244752 |||||||||||| ||||| || | | | ||||| || |||||||||||||||||| Sbjct 378489 GTTGCAGACGGCAACCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGA 378548 Query 244753 GCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAG 244812 || ||||| |||| || || || ||| ||| |||||| |||||||| || Sbjct 378549 GCTGCGAATGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAG 378608 Query 244813 CATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGC 244872 ||| ||||| || |||||| ||| || |||||| || ||| || | | || Sbjct 378609 CATAAAGGGGTTGCCAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGGGC 378668 Query 244873 CTTGACCGTCCTGCGAGCCTTGCCCTCTGC-CTCGTAGCGGGTGTACAGGGCCTCGAACT 244931 || ||| |||| ||| | ||| || |||||| |||| ||||| |||| Sbjct 378669 GCGGATTGTCTTGCG-GCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCAAACT 378727 Query 244932 CGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTCCACTC 244989 || ||| || ||| | || || ||||| || | ||||||||||| |||| || Sbjct 378728 CGTCGCCGTAGCAGTCGGCGAGCCCAGGGCATTCGTTG--GGGCACATGAGGGTCCAGTC 378785 Query 244990 GCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTC 245049 ||| | || ||| | || ||||||||||||||||||||| || || |||||||||| Sbjct 378786 GCCATTCTTCTCGACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTC 378845 Query 245050 CCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTC 245109 | | | || ||| ||| |||||| || || || | || |||||||| || Sbjct 378846 GCGAGCGCGGACTTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACATC 378905 Query 245110 GACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTC 245169 | ||||||||||||||| ||||| |||| |||||| || ||||||||||| || ||||| Sbjct 378906 GGCGTGCCAGGGCTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTC 378965 Query 245170 CACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGC 245228 || || | || | |||||||| ||||| | || || | |||||| ||| || Sbjct 378966 GACGTATCTGGC-AGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGTGC 379024 Query 245229 CGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTC 245288 |||||||||| ||||||| || | | | | | | || | || ||| | | Sbjct 379025 CGTTGGTGCCGGCAATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGATAC 379084 Query 245289 CGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGC 245348 ||||||| || || || | |||||| |||||| ||||| |||||||| |||| Sbjct 379085 CGCCGGCCATTTTAGAAATCATGGCGCAAGTCTTGAGAGTGTCGTAGATGCCCTCGATGC 379144 Query 245349 TGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGT 245408 |||| |||||||| || || ||||| ||||| ||||| || || ||| || || Sbjct 379145 TGTCTTCCTTCATGTCGACGAGGAAGCACGAGGAAAGCTGACACTGAGGCGTGCCCGCGT 379204 Query 245409 TGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 |||| || || || ||||||||| ||| Sbjct 379205 TGAAGAGGGTAGGTGAGGCGTGGGTGAAG 379233 >seq32 Length=314566 Score = 183 bits (202), Expect = 6e-41 Identities = 362/519 (70%), Gaps = 15/519 (3%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAAC 42691 || |||||| || ||||| |||||||| || ||||||| | || | | | | | Sbjct 225471 CCTTGCATCCGTAAAAAGGCCGACTGGGCCATCCGCTGGATCCA-AGACAAGGAGTCTAG 225413 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 |||| | | | |||| ||||| |||| |||||||||||||||||| || || || Sbjct 225412 CTTCGCCCAACGATTGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCATT 225353 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 ||| |||||||| ||||||||| || || || |||||||| || |||||||| |||| Sbjct 225352 CGCGTCCATCTTTTGGCTCAAGAAGCGCGGCCTC-ATGCCCGGGCTTACCTTCTCAAACG 225294 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 ||||||| | | |||||||| |||| | |||||||| ||||| ||| ||| | Sbjct 225293 AACTCATATCCCGTGACGAGGGTTTGCACACCGACTTTGCATGCCTGCTGCACTC---TC 225237 Query 42871 ACCTCAGGCACA-AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929 | |||| ||| | ||| | ||| | ||| | |||||||| || ||||| Sbjct 225236 ATCTCAAGCAAAGAGCAAGC-AAGCAAATCATCCAAGAAATCATCACCGATGCCGTCACC 225178 Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGA 42988 || ||| | || ||||| ||| || | ||| ||||| | || ||||||||||| | Sbjct 225177 ATTGAGCAAGATTTCCTGACGGAGGCTCTG-CCGTGCGCTCTTCTCGGCATGAACTCCAC 225119 Query 42989 CCTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTC 43046 || ||| |||| |||||| | | ||| ||||||| || | || | ||| | Sbjct 225118 ACTGATGAAGCAA-TACATCGAATTCGTTGCCGACCGCCTGTTGGTTGCTCTCGGGAATG 225060 Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 | | | ||||| || || || || || ||||||||||| ||||| ||| ||| Sbjct 225059 AAAAG-GTGTACAAGACAGCGAATCCGTTTGATTTTATGGAGAATATCTCCCTGGGTGGC 225001 Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||||||||| |||||||| || | || |||||| Sbjct 225000 AAGACCAACTTTTTTGAGAAGCGAGTTGGTGAATACCAG 224962 Score = 107 bits (118), Expect = 4e-18 Identities = 220/324 (68%), Gaps = 5/324 (2%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || || |||||| ||||| ||||| |||||| ||||||| Sbjct 225864 ATGTACAAGAAGGCTGAGGCTTCTTTCTGGACAGCCGAAGAGATAGACCTGTCCAAGGAT 225805 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAAAAACATACT 42424 | || || ||| | | | |||| || | ||||||| |||| | |||| | Sbjct 225804 TTGCACGACT-GGAATAATCGCCTGAACGACGATGAAAAGTATTTCATTTCTCACATCTT 225746 Query 42425 GGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAA 42484 ||| ||||| || ||||| || ||||| ||||| || ||||||| |||||| Sbjct 225745 GGCATTCTTTGCTGCCTCGGATGGCATCGTCAACGAAAACCTGGTTGAGCGGTTCAGCGG 225686 Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 ||||||||| ||| || || || |||||||| |||||||| || ||||| | Sbjct 225685 CGAGGTGCAGGTTCCTGAAGCCCGTTGTTTCTACGGGTTCCAGATCATGATGGAGAATAT 225626 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAA 42604 || || ||| ||| | | || || ||||||| ||| ||| | || |||| || Sbjct 225625 CCATTCCGAGACGTATTCTTTATTGATCGACACGTATATCAAGGAGCACGCGCAGCGAAA 225566 Query 42605 CGGGCTGTTCAAGGCCATGGAGAC 42628 || ||||| ||||| || || Sbjct 225565 TTACCTCTTCAATGCCATTGAAAC 225542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337559210640