Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq8 159 3e-34 >seq8 Length=988098 Score = 159 bits (176), Expect = 3e-34 Identities = 262/376 (70%), Gaps = 4/376 (1%) Strand=Plus/Plus Query 20372 AACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATA 20431 |||| ||| || ||||| |||||||| | || |||| || ||||||||| | ||| Sbjct 209028 AACACGTGGCAAGGCGGCAGCGCCATGAGGTGCAGGTCCCGCGCGTTCCACGCGCTCATG 209087 Query 20432 ATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCA 20491 ||||| || | |||| ||| | | || | || | | || | | ||||| Sbjct 209088 ATGATCCTGCGGTCGTACGGCCTGGTCTTGAGCTTGTCGATGACGTCGGCGAGCTGGTCG 209147 Query 20492 AACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCAC 20551 | ||||| ||| || ||||| | | |||||||||||| | || |||||||||| |||| Sbjct 209148 ACCCCCTTGCCCGTGTAGTCCGTCTTGGCGTCCACGTACTCTGCGCCAAAGTGCCGCCAC 209207 Query 20552 TGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGCC 20611 ||||| ||||| || || || | || |||||| | ||||| |||||| | | | | Sbjct 209208 TGGAAGCCGTAGACGGGGCCGAGGTCGCCCTCCTCGCGGTGCGTCAGGCCCAGGCTGTCG 209267 Query 20612 AGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC--TGTTCTTGAAAGCTCCC 20669 |||||||| | || || || ||||||||||||||| || || ||| || ||| Sbjct 209268 AGGAACTCGCGCGACCCGTTGCCGTCCCATATCTTGACGCCGACGTCGCTGAGAG--CCC 209325 Query 20670 TGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACA 20729 |||||| || | |||| | ||||| |||||||| || ||| | ||| ||||| Sbjct 209326 GGGAGTCGGTGTTGCCCTCGATGAACCACAGCAGCTCGGCGACGACGGCGCGCAGAAACA 209385 Query 20730 CCCGCTTTGTGGTTAG 20745 ||||||| ||||| || Sbjct 209386 CCCGCTTCGTGGTGAG 209401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441372033114760