Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq31 105 5e-18 seq3 82.4 6e-11 >seq31 Length=345369 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || ||||||||||| || || ||| ||||||||| |||||||| || |||||| ||| Sbjct 218296 AGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAATGTTCGT 218237 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | |||||||||||||| || || |||||||| || || | | || Sbjct 218236 CCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATCCCTTCC 218177 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 ||||| ||| || ||| | | | | || | || || ||| | ||| Sbjct 218176 TTGTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGACGACTCAACTTCCAGCGTG 218117 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||||||||||| || ||||| || |||||||||||||| Sbjct 218116 ATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCAT 218079 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || ||||||||||| ||| |||||||| |||||||| || || Sbjct 217850 ACCGCCACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 217791 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || | || || | || || || ||||| |||| ||||||||| || ||| Sbjct 217790 CAGGGTGCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGG 217731 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTC 34076 | || ||| ||||| |||||| ||| || | || | | | |||| ||| || Sbjct 217730 GATGCCCTCCTTGTCTTGAATTTTCGACTTGACATTG---TCGATAGTGTCAGAAGACTC 217674 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || |||||||| || || || || ||||||||||| Sbjct 217673 CACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCAT 217623 >seq3 Length=1259731 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||||| || || |||||||||||||| |||||||| || ||| Sbjct 602966 CCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 603025 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || || | |||||||| ||||| || || |||||||| || || Sbjct 603026 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 603085 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 603086 ATGCCCTCCTTGTCC 603100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397061727351478