Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq31 140 8e-28
seq3 116 9e-21
seq25 84.2 5e-11
>seq31
Length=345369
Score = 140 bits (154), Expect = 8e-28
Identities = 171/232 (74%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| || ||||| || | || |||||||| | ||| ||| || ||||| || ||||
Sbjct 218081 CATG-CCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGT 218023
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
|||| || ||||| |||||||| | |||||| || || ||||||| || || ||
Sbjct 218022 CGGCCAGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGG 217963
Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421
||||| || || || || ||||||||||| || || || || || | ||| || |
Sbjct 217962 GCGGGATGCCCTCCTTGTCTTGGATTTTCGCCTTGACATTGTCGATGGTGTCGGAAGACT 217903
Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
| || || || ||||| |||||||| || || ||||||||||| ||||||||
Sbjct 217902 CCACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 217851
Score = 127 bits (140), Expect = 5e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| ||||| || || | || || || || | ||| || ||||| || || ||||||
Sbjct 218536 TGGCCACCACGCAGGCGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCG 218477
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
|| || || | || || || | || || || || ||||| || ||||| ||| |
Sbjct 218476 GCTAGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGA 218417
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || || || || ||||||| ||||| || || || | ||| ||| ||
Sbjct 218416 GGAATGCCCTCCTTGTCTTGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCC 218357
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 218356 ACCTCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 218307
>seq3
Length=1259731
Score = 116 bits (128), Expect = 9e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|||||||| || | || || | || | ||||| || || ||||| || ||||||||
Sbjct 602966 CCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 603025
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || || || || ||||| || ||||| || |||
Sbjct 603026 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 603085
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | || || || || || | ||| || || ||
Sbjct 603086 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 603145
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| |||||||| || || ||||||||||| ||||||||
Sbjct 603146 TCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 603192
>seq25
Length=408197
Score = 84.2 bits (92), Expect = 5e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| || || || |||||||| || || || || || || | || || || || ||||||
Sbjct 312413 TTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 312472
Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405
| |||||| || ||||| || || || |||||||| || | || || || ||
Sbjct 312473 AAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 312532
Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
|| | ||| || || || ||||||||||| ||||| || ||||| ||||| || ||
Sbjct 312533 ATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 312591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179652299109242
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |