Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1 230 3e-55 seq32 95.1 1e-14 >seq1 Length=1559860 Score = 230 bits (254), Expect = 3e-55 Identities = 1163/1841 (63%), Gaps = 27/1841 (1%) Strand=Plus/Plus Query 113558 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 113617 |||| | ||||||| ||||| ||| ||| | | || | ||||||||| || ||| Sbjct 377563 TCAACGGTGAACTGGATGGGGGCCGCGGCGGCTTGCGTGCGCAAGTAGTACATGCCAGTC 377622 Query 113618 TTGAGCCCCTGCTTCCA---GGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGA 113674 ||||| ||| ||||||| |||| | |||||||| | | |||| | ||||| Sbjct 377623 TTGAGACCCAGCTTCCACCCGGCAAAG---TGCATCGACGTGATCTTGCCCATGGTTGGG 377679 Query 113675 CTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCC 113734 | |||| | ||| | | ||||| || ||||| ||| || || || || ||| Sbjct 377680 TCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCGGCC 377739 Query 113735 ATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCA 113794 || | | ||||| | | |||||||| || || |||| || ||| | || Sbjct 377740 ATCTGCACCACATGACGCTGCGAAATTTCCCAGACCGTCTTGTACAGAGCCTTTACCTCG 377799 Query 113795 TCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTTCATA 113854 | || || | ||| || ||||| ||||| | | | ||| ||| |||||| Sbjct 377800 CCGGGAATGTTGGGGATGTTCTGGATCGAGCCGTTCTCGGCAATGATGCGATTCTTCATG 377859 Query 113855 TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAA 113912 | | |||||| ||||| || | |||||||| | || ||| | |||| || Sbjct 377860 GCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGGGT--TGACGACCT 377917 Query 113913 CAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACT 113972 ||||| ||||| ||| ||||| | | || || |||| |||||| ||||| ||||||| Sbjct 377918 GGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCTCGAAGCACT 377977 Query 113973 CATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGT 114032 | ||||| |||| || || | ||||| || ||||||||||| || | || || || Sbjct 377978 CGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCAGCAGCGAGT 378037 Query 114033 TACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTC---GTAGTTGAGCT 114089 | || | || | ||| | || | |||||||||| ||||| || ||| | | Sbjct 378038 TGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCACTCCCACAAGTCGGAC- 378096 Query 114090 TTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAA 114149 | | | | | |||||| |||||||| ||||| |||| ||||| || ||||||| | Sbjct 378097 --GGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGGAGATCCCTTGA 378154 Query 114150 ATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGAT 114209 | || ||| || ||||| ||| |||| || |||| | ||| ||||| | Sbjct 378155 ACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCGACGCCGTCAAGGCGGCGTGGT 378214 Query 114210 ACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTC 114269 | || ||||||||||| | |||| | |||||| || ||||| | | | Sbjct 378215 AGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTCAAAGGGCATGC 378274 Query 114270 GGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCA 114329 | | || || | || || | ||||| ||||||| ||||| || ||||| | || Sbjct 378275 GAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATGGGACGATGCCGCA 378334 Query 114330 TATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGAT 114389 | || || || || | ||||| || || ||||| | | | || |||| Sbjct 378335 TGTTGCTGTTGCGTGCTTCTTGGACGGGGTAGTGGTTGACGTCGATGATCTTGTTGAGAT 378394 Query 114390 TTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTT 114449 || | || || |||| || || ||||||| | | || | ||| || | Sbjct 378395 TTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGAAGTCGTACTTGCCTTGGTCGT 378454 Query 114450 CATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTAT 114509 | ||| | || ||||| | || || || || || || | ||| || Sbjct 378455 AGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGGG 378514 Query 114510 CAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTT 114569 | | |||||| ||||| || || || | || || || |||||| ||||||||||| | Sbjct 378515 CCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAATGGTTCCCAAGTTCTTCT 378574 Query 114570 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 114629 | || ||| |||| || ||||||||| ||||| | || | || ||||| || | Sbjct 378575 GGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGGTCT 378634 Query 114630 GGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCC 114688 | | || ||| || | | ||| | | || | ||| | | || | | | || || Sbjct 378635 GAGCCTCGAGGATCGAGTACCACAGCTTCTG-GGCGCGGATTGTCTTGCGGCCACGGCCT 378693 Query 114689 TCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCT 114748 || |||||||||| || | || |||||||| || || | || | |||||| Sbjct 378694 TCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGTAGCAGTCGGCGAGCCCA 378753 Query 114749 GGTGCCTT-ATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAA 114807 || || || | ||||| | ||| | ||| | ||| || ||| |||||||||||||| Sbjct 378754 GG-GCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATGAA 378812 Query 114808 GAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 114867 |||||| |||||||| || || |||||| || ||| ||| |||| || | || || Sbjct 378813 GAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCGTG 378872 Query 114868 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 114927 || | | || | || || | || ||| |||||||| || |||||||| | || Sbjct 378873 GTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATGGC 378932 Query 114928 GATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATAC 114984 || | ||| || || | |||| || || || || ||| || || || Sbjct 378933 GAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAGAC 378992 Query 114985 GCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATT 115044 || ||||| |||| || || | || ||| || || || ||| || | Sbjct 378993 TCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCGGT 379052 Query 115045 GGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 115104 || | | |||| || || || ||||| || ||| || || || ||||| Sbjct 379053 AGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCGCA 379112 Query 115105 CTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCA 115164 | ||||| || ||||||| || ||||| ||| |||| | ||| |||||||| Sbjct 379113 AGTCTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAGCA 379172 Query 115165 GCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 115224 || | || | || || || |||||||||||||| |||| |||||| |||| Sbjct 379173 CGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTGAA 379232 Query 115225 CA--TACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGA 115282 | | || |||||| | |||||| |||| |||| ||||| || || Sbjct 379233 GAATTTACT--GGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGTTGTCTCCCCAG 379290 Query 115283 ATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGC 115342 || |||| | || ||||| | ||||| || ||| ||| | | | || || ||| Sbjct 379291 ATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCGTCCAGC 379350 Query 115343 CTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 115383 || |||| || ||||| ||||||| |||||| || Sbjct 379351 TTCAGGAGATACGATCGCTCCAGCGTCTTGAAACCAAAGTA 379391 >seq32 Length=314566 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| | ||||||||||||||| |||||||| || |||||| || || Sbjct 225254 GCAAAGTCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGTAAGCCCG 225313 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 |||||||| || |||||||| | ||| || || | |||| ||| ||||||||| Sbjct 225314 GGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAATGCACCACTGAAGAAGATG 225373 Query 126167 CCCTCCACACACGCGAACGCAA 126188 ||||| ||| ||||| |||| Sbjct 225374 CCCTCGACAGCGGCGAAGGCAA 225395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597352562098120