Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq3 145 8e-30
seq31 122 9e-23
seq25 114 1e-20
>seq3
Length=1259731
Score = 145 bits (160), Expect = 8e-30
Identities = 163/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||| |||||| |||| ||||||||||| || || ||||| || ||||| || || |
Sbjct 602978 CGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA 603037
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || |||||||| ||||| || ||||||||||||||||||| || | || |||||||
Sbjct 603038 TCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 603097
Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173
||| ||| || |||| | | | |||||| || ||||| |||| ||||||
Sbjct 603098 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATG 603157
Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
|| || ||||| || ||||| || || || ||||| ||
Sbjct 603158 GTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 603195
>seq31
Length=345369
Score = 122 bits (134), Expect = 9e-23
Identities = 161/218 (74%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||| ||||| |||| ||| |||||| || || ||||| || |||| || || |
Sbjct 218294 ACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAATGTTCGTCC 218235
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || |||||||| || || || || |||||||||||||||| || | | |||||
Sbjct 218234 GTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGAATCCCTTCCTT 218175
Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 42170
|| | ||| | || | |||| ||| | | | ||||| ||| || || || | ||||
Sbjct 218174 GT-CTTGAATCTTCGACTTGA-CGTTGTCAATGGTGTCTGACGACTCAACTTCCAGCGTG 218117
Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| ||||| ||||| || ||||| ||||||||||||||
Sbjct 218116 ATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCAT 218079
Score = 122 bits (134), Expect = 9e-23
Identities = 155/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
||||| ||||| || |||||||||||| ||||| || || || || | | | || ||
Sbjct 218516 CACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCCTC 218457
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
|||||||||||||| || |||||||||||||| || | || | || |||||||| | |
Sbjct 218456 AAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGT-CTT 218398
Query 42119 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177
|| |||| | || | | | | || || ||| ||||| |||| ||||||||| |
Sbjct 218397 GAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTCT 218338
Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || || |||||||| || || || |||||
Sbjct 218337 TCCCGGTCAGCGTCTTGACGAAAATCTGCAT 218307
Score = 111 bits (122), Expect = 2e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
|||| ||| | ||| ||||| || || ||||| || ||||| || || | || ||
Sbjct 217831 ACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTCG 217772
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
||||| |||||||| || || | ||||||||||||| || | || |||||||| | ||
Sbjct 217771 AGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGT-CTTG 217713
Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178
| |||| | |||| | | | ||||| || ||||| |||| |||||||| ||
Sbjct 217712 AATTTTCGACTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTT 217653
Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || || |||||||| |||||||||||
Sbjct 217652 TCCGGTGAGGGTCTTTACGAAGATTTGCAT 217623
>seq25
Length=408197
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
|||| ||||| ||||| || ||||| || || | || || |||||||| ||||| || |
Sbjct 312411 CCTTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 312470
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| | ||||||||||||| || | || |||||||||| ||| || |||| |
Sbjct 312471 TCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 312530
Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198
| | ||||||| || || || |||| ||||||||| |||||||| || ||||| ||||
Sbjct 312531 CGATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 312590
Query 42199 A 42199
|
Sbjct 312591 A 312591
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543211856167760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |