Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq31 140 3e-28 seq3 93.3 4e-14 seq25 82.4 8e-11 >seq31 Length=345369 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | |||||| || |||||||||||||| || || | ||| | | | || Sbjct 218518 AGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCC 218459 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| || ||| | ||||| |||||||| || |||||||| || || || ||| Sbjct 218458 TCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCT 218399 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| || | |||||| | ||||| || | || | |||| Sbjct 218398 TGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTC 218339 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||||| || || |||||||| ||||| Sbjct 218338 TTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 218307 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| | ||| || ||||||| || ||||| || || |||||||| || || Sbjct 217850 ACCGCCACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 217791 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | ||||| ||||| || || ||| | || | |||||||||||||| || Sbjct 217790 CAGGGTGCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGG 217731 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| ||||| ||| ||| || | || ||| | ||||| Sbjct 217730 GATGCCCTCCTTGTCTTGAATTTTCGACTTGACATTGTCGATAGTGTCAGAAGACTCCAC 217671 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| ||||| | || |||||||| |||||||| Sbjct 217670 CTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCAT 217623 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | || || ||||| | || ||||| || || |||||||| || || Sbjct 218077 CCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCC 218018 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| ||||||| || || ||||| ||| | || | || ||||||||||| || Sbjct 218017 AGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGG 217958 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| ||||| ||| ||| || | || || | ||||| Sbjct 217957 ATGCCCTCCTTGTCTTGGATTTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACC 217898 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| || || | || || ||||| || ||||| Sbjct 217897 TCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 217851 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | ||||| || || | || || || || || |||||||| || || Sbjct 218305 CCGCCGCGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 218246 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || ||||||||||||||| | || || |||||||||||||| ||| Sbjct 218245 AATGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGGA 218186 Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359 || ||||| || ||||| || || Sbjct 218185 ATCCCTTCCTTGTCTTGAATCTT 218163 >seq3 Length=1259731 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || |||||||| || || | |||||| | || || ||||||||||| ||| | Sbjct 603002 TCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAG 603061 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| |||||||||||||| || || || || || || || || || ||| ||| Sbjct 603062 ATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 603121 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || | ||||| || | || | |||||| || || | || || ||| Sbjct 603122 TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACG 603181 Query 64433 AAAATTTGCATTTT 64446 ||||| ||||| || Sbjct 603182 AAAATCTGCATCTT 603195 >seq25 Length=408197 Score = 82.4 bits (90), Expect = 8e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || ||||||||||| || || | ||| || | || || ||||||||||| ||| | || Sbjct 312413 TTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 312472 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 | ||||||||||||||||| || || || || || || || || ||| ||| || Sbjct 312473 AAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 312532 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | || || || || || || | || | ||||||||| |||| || || || ||| Sbjct 312533 ATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAA 312592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643931867160