Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 230 2e-55 seq31 118 1e-21 seq3 100 3e-16 seq32 96.9 3e-15 seq25 89.7 5e-13 >seq1 Length=1559860 Score = 230 bits (254), Expect = 2e-55 Identities = 986/1540 (64%), Gaps = 25/1540 (2%) Strand=Plus/Plus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || ||||||||||||| || |||| | || | ||| ||| | | Sbjct 377906 GGTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGG 377965 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| | ||||| ||||| || || || | ||||| || || |||||| ||| | Sbjct 377966 GCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGA 378025 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 || || || || || | |||||| | || | ||||| | | | ||| |||| Sbjct 378026 GCAGCAGCGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCACTCCC 378085 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGAC 153267 ||| | ||||| ||| ||||||||||||| |||| | | ||| | ||| ||| Sbjct 378086 ACAAGTCGGACGGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGGAG 378145 Query 153268 TGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTA-GCC-TCGAG 153325 || ||||| |||| || || | |||||| || || | | ||| || || Sbjct 378146 ATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTC-CACCGACGCCGTCAAG 378204 Query 153326 CGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTC 153385 ||| | | ||| ||||| || || || || || || || || || ||| Sbjct 378205 -GCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTC 378263 Query 153386 GTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGG 153445 | |||||||| ||| | ||||||||||||| || || | |||||| || ||||| Sbjct 378264 AAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATGGG 378323 Query 153446 TCGATGCTTCTCGTTGCTGCGCCTCGCG-CTCGCTATGGGATAGTGATTGCGATCGATAA 153504 |||||| | ||||||| | || || | | ||| ||||| ||| ||||| | Sbjct 378324 ACGATGCCGCATGTTGCTGTTGCGTGCTTCTTGG-ACGGGGTAGTGGTTGACGTCGATGA 378382 Query 153505 TTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGG 153564 | |||||||| || || || ||||| || | | | || || | ||| || || Sbjct 378383 TCTTGTTGAGATTTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGAAGTCGTACT 378442 Query 153565 TCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCG 153624 | || |||| | || | || ||||| || || || || |||||||| Sbjct 378443 TGCCTTGGTCGTAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGACGGCAA 378502 Query 153625 TCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGC 153684 ||| |||| | | ||||| | ||||||| |||||||||| || ||| | Sbjct 378503 CCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAATGGTTC 378562 Query 153685 CCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGC 153744 |||| || | ||| ||||| || | ||||| || ||| | ||||| | || || Sbjct 378563 CCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGGGGTTGC 378622 Query 153745 CGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCC 153804 | |||||| || | |||| ||| | ||| | ||| || || | || | Sbjct 378623 CAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGGGCGCGGATTGTCTTGC 378682 Query 153805 GATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGT 153864 | ||||| |||| |||||| || |||| ||||||||||||||||||||||| Sbjct 378683 GGCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGTAGCAGT 378742 Query 153865 CGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCA-----CATATCGTCGGCGTT 153919 ||||||| || || || | | || ||||| || | ||| ||| || || | Sbjct 378743 CGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCAT-TCTTC----TC 378797 Query 153920 GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCA 153979 ||| || |||||| || || || | ||| ||||| | ||||||||| || | Sbjct 378798 GACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGAC 378857 Query 153980 ATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGG 154039 |||||| ||| ||| | | |||| || | | ||| |||||||||||||| Sbjct 378858 TTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGG 378917 Query 154040 TTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCAC 154096 || | ||||| ||| | ||| || ||| || ||||| || ||||||| | | Sbjct 378918 CTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGC 378977 Query 154097 CATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATT 154156 | ||||||||||| |||| |||||| | | |||| | | |||||||||||| Sbjct 378978 AGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGC 379037 Query 154157 GATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTT 154216 || | | ||| || || | | || ||||| | ||| || |||||| | || Sbjct 379038 AATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTT 379097 Query 154217 TGATATGGCAGCGC-AGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGA 154275 || || |||| |||| || || ||||||||| |||||||| || || | Sbjct 379098 AGAAATCATGGCGCAAGTC-TTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCA 379156 Query 154276 CGCCGAGCAAGAAACACGAACACATTTGCGGAATG-CGCGTTCCCGCCGAAAAGAGGGTG 154334 | ||| | ||| ||||| | | || | || |||| ||||| |||||||| Sbjct 379157 TGTCGACGAGGAAGCACGAGGAAAGCTG-ACACTGAGGCGTGCCCGCGTTGAAGAGGGTA 379215 Query 154335 GGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCG 154394 || ||||| || || | ||| | ||| | | ||| ||||| | | || || Sbjct 379216 GGTGAGGCGTGGGTGAAGAATTTACTGGACATGAGGTTGTAGGTTTCCAGGACGCGCTCA 379275 Query 154395 ATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCG 154454 || | || || ||||||| || || ||||||| ||||||||| || |||||| | Sbjct 379276 ATGTTGTCTCCCCAGATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACA 379335 Query 154455 ACTCTATTGTCAATCTTCAAGAGATATCCAT-TTTCGAGGGTTTTGTAACCGAAATACTT 154513 | | ||| | ||||| |||||| | || || || || ||| |||| || |||| Sbjct 379336 ATCTTGCCGTCCAGCTTCAGGAGATA-CGATCGCTCCAGCGTCTTGAAACCAAAGTACTG 379394 Query 154514 GTATTCAAAATCTAGCTCATGAGCGATGGCCGCATCGAGC 154553 || | || ||| ||| | | | ||||| | |||||| Sbjct 379395 ATAGTTGAAGTCTCTCTCGTAAACAATGGCAGAGTCGAGC 379434 >seq31 Length=345369 Score = 118 bits (130), Expect = 1e-21 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||||| || | || | | | |||||||| || |||||||||||| Sbjct 218306 GCCGCCGCGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 218247 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||||||| || || |||| | |||| || ||||| ||||| || || Sbjct 218246 CAATGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGG 218187 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||| ||||| ||| | || | || | ||| || | |||||| | |||||| Sbjct 218186 AATCCCTTCCTTGTC-TTGAATCTTCGACTTGACGTTG-TCAATGGTGTCTGACGACTCA 218129 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || || | ||| | ||||| || ||||| || || ||||| || |||||| Sbjct 218128 ACTTCCAGCGTGATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCATG 218078 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| |||| ||| | ||| | | | || ||||| || |||||||||||| Sbjct 218078 GCCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 218019 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||| ||||||||||| || | | |||| | || || ||||| || || Sbjct 218018 CAGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGG 217959 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| |||||| || | ||||| | | |||||||| ||||||| Sbjct 217958 GATGCCCTCCTTGTCTTGGATTTTCGCCTTGACATTGT-CGATGGTGTCGGAAGACTCCA 217900 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||| || || || || || |||||||| Sbjct 217899 CCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 217851 Score = 113 bits (124), Expect = 4e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||||||||||||| | || | | ||||| || || ||||| | | Sbjct 218500 GACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCCTCAAGCTGCTTACCAGCA 218441 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| || || ||||| || || || ||||| ||| |||| | || | Sbjct 218440 AAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCT-TGAATTTTCGACTTCAC 218382 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||| || | |||||||||||||| ||| | || || || ||||| || || Sbjct 218381 ATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTCTTCCCGGTCAGCGTCTT 218322 Query 138600 TACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 218321 GACGAAAATCTGCATG 218306 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| || | ||| | ||| | | | || ||||| || |||||||||||| | Sbjct 217849 CCGCCACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCC 217790 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || ||||| |||||||| | | |||| | ||||| ||||| || || Sbjct 217789 AGGGTGCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGG 217730 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| |||| | || |||| || | ||||| | ||||||| Sbjct 217729 ATGCCCTCCTTGTC-TTGAATTTTCGACTTGACATTG-TCGATAGTGTCAGAAGACTCCA 217672 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 |||||| || | || || || || || || ||||| || || ||||||| Sbjct 217671 CCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCATGG 217621 >seq3 Length=1259731 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443 || ||| || |||| |||| || || || | | | |||||| || ||||||||||| Sbjct 602962 GCCGCCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC 603021 Query 138444 GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGG 138503 | || || || |||||||| || || || | | |||| || ||||| ||||| || Sbjct 603022 GGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGG 603081 Query 138504 AGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACT 138562 || || || || ||||| ||| || || | |||| || | |||||||| |||| Sbjct 603082 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGAAGACT 603140 Query 138563 CCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||||| || | || || || || || || || || ||||||||||| Sbjct 603141 CCACCTCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 603192 >seq32 Length=314566 Score = 96.9 bits (106), Expect = 3e-15 Identities = 288/439 (66%), Gaps = 9/439 (2%) Strand=Plus/Minus Query 52402 TGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTT 52461 |||| ||||||||| ||||||||| | || || || || || ||||||||| Sbjct 225398 TGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCATTCGCGTCCATCTTTT 225339 Query 52462 ACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCG 52521 | || | | ||| | |||||||| || || ||| ||||| | ||||| || | Sbjct 225338 GGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCAAACGAACTCATATCCCGTG 225279 Query 52522 ACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAAT 52581 |||| || ||||||| |||||||| ||||| || || | | | | | ||| Sbjct 225278 ACGAGGGTTTGCACACCGACTTTGCATGCCTG--CTGCA---CTCTCATCTCAAGCAAAG 225224 Query 52582 TGGATTC--GGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTT 52639 | | | | | | |||| || ||| || || || | || || | || || Sbjct 225223 AGCAAGCAAGCAAATCATCCAAGAAATCATCACCGATGCCGTCACCATTGAGCAAGATTT 225164 Query 52640 TTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCG-CAGTCCATGTGCGAGT 52698 | |||| || |||||| || || || ||||||||| | || | ||| | | Sbjct 225163 CCTGACGGAGGCTCTGCCGTGCGCTCTTCTCGGCATGAACTCCACACTG-ATGAAGCAAT 225105 Query 52699 ACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG 52758 ||||||| || || || || || |||||||| |||||| | |||| | ||| Sbjct 225104 ACATCGAATTCGTTGCCGACCGCCTGTTGGTTGCTCTCGGGAATGAAAAGGTGTACAAGA 225045 Query 52759 CTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCG 52818 | ||||||||||| |||||| | || || || || | ||||||||||||||||| | Sbjct 225044 CAGCGAATCCGTTTGATTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACTTTTTTG 224985 Query 52819 AGAAGCGAGTCGGCGAGTA 52837 |||||||||| || || || Sbjct 224984 AGAAGCGAGTTGGTGAATA 224966 >seq25 Length=408197 Score = 89.7 bits (98), Expect = 5e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| ||||||||||||||| || || || ||||| || || || || | | ||| Sbjct 312411 CCTTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 312470 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | | |||||| ||||| ||||| || || || ||||| ||| || || | |||| Sbjct 312471 TCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG- 312529 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | ||||||| ||||| ||||||| ||| | || || || ||||| || || ||| Sbjct 312530 TCGATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 312589 Query 138604 AAA 138606 ||| Sbjct 312590 AAA 312592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261537744080