Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq1 230 2e-55
seq31 118 1e-21
seq3 100 3e-16
seq32 96.9 3e-15
seq25 89.7 5e-13
>seq1
Length=1559860
Score = 230 bits (254), Expect = 2e-55
Identities = 986/1540 (64%), Gaps = 25/1540 (2%)
Strand=Plus/Plus
Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087
||||||| || || ||||||||||||| || |||| | || | ||| ||| | |
Sbjct 377906 GGTTGACGACCTGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGG 377965
Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147
| || ||| | ||||| ||||| || || || | ||||| || || |||||| ||| |
Sbjct 377966 GCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGA 378025
Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207
|| || || || || | |||||| | || | ||||| | | | ||| ||||
Sbjct 378026 GCAGCAGCGAGTTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCACTCCC 378085
Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGAC 153267
||| | ||||| ||| ||||||||||||| |||| | | ||| | ||| |||
Sbjct 378086 ACAAGTCGGACGGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGGAG 378145
Query 153268 TGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTA-GCC-TCGAG 153325
|| ||||| |||| || || | |||||| || || | | ||| || ||
Sbjct 378146 ATCCCTTGAACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTC-CACCGACGCCGTCAAG 378204
Query 153326 CGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTC 153385
||| | | ||| ||||| || || || || || || || || || |||
Sbjct 378205 -GCGGCGTGGTAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTC 378263
Query 153386 GTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGG 153445
| |||||||| ||| | ||||||||||||| || || | |||||| || |||||
Sbjct 378264 AAAGGGCATGCGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATGGG 378323
Query 153446 TCGATGCTTCTCGTTGCTGCGCCTCGCG-CTCGCTATGGGATAGTGATTGCGATCGATAA 153504
|||||| | ||||||| | || || | | ||| ||||| ||| ||||| |
Sbjct 378324 ACGATGCCGCATGTTGCTGTTGCGTGCTTCTTGG-ACGGGGTAGTGGTTGACGTCGATGA 378382
Query 153505 TTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGG 153564
| |||||||| || || || ||||| || | | | || || | ||| || ||
Sbjct 378383 TCTTGTTGAGATTTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGAAGTCGTACT 378442
Query 153565 TCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCG 153624
| || |||| | || | || ||||| || || || || ||||||||
Sbjct 378443 TGCCTTGGTCGTAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGACGGCAA 378502
Query 153625 TCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGC 153684
||| |||| | | ||||| | ||||||| |||||||||| || ||| |
Sbjct 378503 CCTCGTCGGGGGCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAATGGTTC 378562
Query 153685 CCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGC 153744
|||| || | ||| ||||| || | ||||| || ||| | ||||| | || ||
Sbjct 378563 CCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGGGGTTGC 378622
Query 153745 CGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCC 153804
| |||||| || | |||| ||| | ||| | ||| || || | || |
Sbjct 378623 CAGTCTCGGTCTGAGCCTCGAGGATCGAGTACCACAGCTTCTGGGCGCGGATTGTCTTGC 378682
Query 153805 GATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGT 153864
| ||||| |||| |||||| || |||| |||||||||||||||||||||||
Sbjct 378683 GGCCACGGCCTTCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTCGCCGTAGCAGT 378742
Query 153865 CGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCA-----CATATCGTCGGCGTT 153919
||||||| || || || | | || ||||| || | ||| ||| || || |
Sbjct 378743 CGGCGAGCCCAGGGCATTCGTTGGGGCACATGAGGGTCCAGTCGCCAT-TCTTC----TC 378797
Query 153920 GACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCA 153979
||| || |||||| || || || | ||| ||||| | ||||||||| || |
Sbjct 378798 GACACGCTTCATGAAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGAC 378857
Query 153980 ATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGG 154039
|||||| ||| ||| | | |||| || | | ||| ||||||||||||||
Sbjct 378858 TTCCTCCTTGCCGTGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGG 378917
Query 154040 TTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCAC 154096
|| | ||||| ||| | ||| || ||| || ||||| || ||||||| | |
Sbjct 378918 CTCCAGGTAGATGGCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGC 378977
Query 154097 CATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATT 154156
| ||||||||||| |||| |||||| | | |||| | | ||||||||||||
Sbjct 378978 AGTGTTGTTGAAGACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGC 379037
Query 154157 GATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTT 154216
|| | | ||| || || | | || ||||| | ||| || |||||| | ||
Sbjct 379038 AATGTAGGATCCGGTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTT 379097
Query 154217 TGATATGGCAGCGC-AGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGA 154275
|| || |||| |||| || || ||||||||| |||||||| || || |
Sbjct 379098 AGAAATCATGGCGCAAGTC-TTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCA 379156
Query 154276 CGCCGAGCAAGAAACACGAACACATTTGCGGAATG-CGCGTTCCCGCCGAAAAGAGGGTG 154334
| ||| | ||| ||||| | | || | || |||| ||||| ||||||||
Sbjct 379157 TGTCGACGAGGAAGCACGAGGAAAGCTG-ACACTGAGGCGTGCCCGCGTTGAAGAGGGTA 379215
Query 154335 GGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCG 154394
|| ||||| || || | ||| | ||| | | ||| ||||| | | || ||
Sbjct 379216 GGTGAGGCGTGGGTGAAGAATTTACTGGACATGAGGTTGTAGGTTTCCAGGACGCGCTCA 379275
Query 154395 ATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCG 154454
|| | || || ||||||| || || ||||||| ||||||||| || |||||| |
Sbjct 379276 ATGTTGTCTCCCCAGATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACA 379335
Query 154455 ACTCTATTGTCAATCTTCAAGAGATATCCAT-TTTCGAGGGTTTTGTAACCGAAATACTT 154513
| | ||| | ||||| |||||| | || || || || ||| |||| || ||||
Sbjct 379336 ATCTTGCCGTCCAGCTTCAGGAGATA-CGATCGCTCCAGCGTCTTGAAACCAAAGTACTG 379394
Query 154514 GTATTCAAAATCTAGCTCATGAGCGATGGCCGCATCGAGC 154553
|| | || ||| ||| | | | ||||| | ||||||
Sbjct 379395 ATAGTTGAAGTCTCTCTCGTAAACAATGGCAGAGTCGAGC 379434
>seq31
Length=345369
Score = 118 bits (130), Expect = 1e-21
Identities = 167/231 (72%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
|||||| || | ||||| || | || | | | |||||||| || ||||||||||||
Sbjct 218306 GCCGCCGCGGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 218247
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| || || ||||||||| || || |||| | |||| || ||||| ||||| || ||
Sbjct 218246 CAATGTTCGTCCGTCCTCGAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCGGGGGG 218187
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564
|| ||||| ||||| ||| | || | || | ||| || | |||||| | ||||||
Sbjct 218186 AATCCCTTCCTTGTC-TTGAATCTTCGACTTGACGTTG-TCAATGGTGTCTGACGACTCA 218129
Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|| || | ||| | ||||| || ||||| || || ||||| || ||||||
Sbjct 218128 ACTTCCAGCGTGATTGTTTTTCCCGTCAGTGTCTTGACAAAGATTTGCATG 218078
Score = 113 bits (124), Expect = 4e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
|||||| |||| |||| ||| | ||| | | | || ||||| || ||||||||||||
Sbjct 218078 GCCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 218019
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| || || ||| ||||||||||| || | | |||| | || || ||||| || ||
Sbjct 218018 CAGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGG 217959
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || ||||| |||||| || | ||||| | | |||||||| |||||||
Sbjct 217958 GATGCCCTCCTTGTCTTGGATTTTCGCCTTGACATTGT-CGATGGTGTCGGAAGACTCCA 217900
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || ||||| || || || || || ||||||||
Sbjct 217899 CCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 217851
Score = 113 bits (124), Expect = 4e-20
Identities = 144/196 (73%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||||||||||||||||||| | || | | ||||| || || ||||| | |
Sbjct 218500 GACTCCTTTTGAATGTTGTAGTCGGCTAGGGTTCTCCCATCCTCAAGCTGCTTACCAGCA 218441
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || ||||| || || ||||| || || || ||||| ||| |||| | || |
Sbjct 218440 AAGATGAGTCGCTGCTGATCAGGAGGAATGCCCTCCTTGTCT-TGAATTTTCGACTTCAC 218382
Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
| || | ||| || | |||||||||||||| ||| | || || || ||||| || ||
Sbjct 218381 ATTATCAATGGTATCAGACGACTCCACCTCGAGCGTGATGGTCTTCCCGGTCAGCGTCTT 218322
Query 138600 TACAAAAATCTGCATG 138615
|| ||||||||||||
Sbjct 218321 GACGAAAATCTGCATG 218306
Score = 100 bits (110), Expect = 3e-16
Identities = 163/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| |||| || | ||| | ||| | | | || ||||| || |||||||||||| |
Sbjct 217849 CCGCCACGCAGGCGAAGAACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCC 217790
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || || ||||| |||||||| | | |||| | ||||| ||||| || ||
Sbjct 217789 AGGGTGCGGCCATCTTCGAGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGG 217730
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || ||||| ||| |||| | || |||| || | ||||| | |||||||
Sbjct 217729 ATGCCCTCCTTGTC-TTGAATTTTCGACTTGACATTG-TCGATAGTGTCAGAAGACTCCA 217672
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616
|||||| || | || || || || || || ||||| || || |||||||
Sbjct 217671 CCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCATGG 217621
>seq3
Length=1259731
Score = 100 bits (110), Expect = 3e-16
Identities = 163/232 (70%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443
|| ||| || |||| |||| || || || | | | |||||| || |||||||||||
Sbjct 602962 GCCGCCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTC 603021
Query 138444 GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGG 138503
| || || || |||||||| || || || | | |||| || ||||| ||||| ||
Sbjct 603022 GGCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGG 603081
Query 138504 AGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACT 138562
|| || || || ||||| ||| || || | |||| || | |||||||| ||||
Sbjct 603082 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG-TCGATGGTGTCGGAAGACT 603140
Query 138563 CCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||||||| || | || || || || || || || || |||||||||||
Sbjct 603141 CCACCTCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 603192
>seq32
Length=314566
Score = 96.9 bits (106), Expect = 3e-15
Identities = 288/439 (66%), Gaps = 9/439 (2%)
Strand=Plus/Minus
Query 52402 TGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTT 52461
|||| ||||||||| ||||||||| | || || || || || |||||||||
Sbjct 225398 TGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCATTCGCGTCCATCTTTT 225339
Query 52462 ACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCG 52521
| || | | ||| | |||||||| || || ||| ||||| | ||||| || |
Sbjct 225338 GGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCAAACGAACTCATATCCCGTG 225279
Query 52522 ACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAAT 52581
|||| || ||||||| |||||||| ||||| || || | | | | | |||
Sbjct 225278 ACGAGGGTTTGCACACCGACTTTGCATGCCTG--CTGCA---CTCTCATCTCAAGCAAAG 225224
Query 52582 TGGATTC--GGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTT 52639
| | | | | | |||| || ||| || || || | || || | || ||
Sbjct 225223 AGCAAGCAAGCAAATCATCCAAGAAATCATCACCGATGCCGTCACCATTGAGCAAGATTT 225164
Query 52640 TTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCG-CAGTCCATGTGCGAGT 52698
| |||| || |||||| || || || ||||||||| | || | ||| | |
Sbjct 225163 CCTGACGGAGGCTCTGCCGTGCGCTCTTCTCGGCATGAACTCCACACTG-ATGAAGCAAT 225105
Query 52699 ACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG 52758
||||||| || || || || || |||||||| |||||| | |||| | |||
Sbjct 225104 ACATCGAATTCGTTGCCGACCGCCTGTTGGTTGCTCTCGGGAATGAAAAGGTGTACAAGA 225045
Query 52759 CTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCG 52818
| ||||||||||| |||||| | || || || || | ||||||||||||||||| |
Sbjct 225044 CAGCGAATCCGTTTGATTTTATGGAGAATATCTCCCTGGGTGGCAAGACCAACTTTTTTG 224985
Query 52819 AGAAGCGAGTCGGCGAGTA 52837
|||||||||| || || ||
Sbjct 224984 AGAAGCGAGTTGGTGAATA 224966
>seq25
Length=408197
Score = 89.7 bits (98), Expect = 5e-13
Identities = 131/183 (72%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484
|||| ||||||||||||||| || || || ||||| || || || || | | |||
Sbjct 312411 CCTTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGA 312470
Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543
| | |||||| ||||| ||||| || || || ||||| ||| || || | ||||
Sbjct 312471 TCAAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG- 312529
Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603
|| | ||||||| ||||| ||||||| ||| | || || || ||||| || || |||
Sbjct 312530 TCGATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 312589
Query 138604 AAA 138606
|||
Sbjct 312590 AAA 312592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261537744080
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