Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3 131 2e-25 seq31 129 6e-25 seq32 123 2e-23 seq25 113 4e-20 >seq3 Length=1259731 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| |||||| || | || ||| || || || ||||| ||| || Sbjct 602966 CCACCGCGCAGGCGCAGCACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCC 603025 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||| | ||||||||| ||||| || Sbjct 603026 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 603085 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | | ||| || Sbjct 603086 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 603145 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || || || || || || || || ||||||||||| Sbjct 603146 TCGAGGGTGATGGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 603192 >seq31 Length=345369 Score = 129 bits (142), Expect = 6e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||| ||| | || || || || || || ||||| ||| ||| ||||| ||| || Sbjct 217831 ACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTCG 217772 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 |||||||| ||||| ||||||| |||||||| ||||| || |||||||||||||| Sbjct 217771 AGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGA 217712 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 |||||| ||||| | |||| ||||| | | ||| || |||| ||| | || || Sbjct 217711 ATTTTCGACTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTT 217652 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 ||||| || || ||||| || || ||||||| Sbjct 217651 CCGGTGAGGGTCTTTACGAAGATTTGCATGG 217621 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | ||| ||||| |||||||| ||||| ||| | Sbjct 218533 CCACCACGCAGGCGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTTGTAGTCGGCT 218474 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || ||||| || ||||| |||| | |||||||||||| ||||| Sbjct 218473 AGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTGATCAGGAGGA 218414 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| |||||| ||| | | || | ||| || | ||| || Sbjct 218413 ATGCCCTCCTTGTCTTGAATTTTCGACTTCACATTATCAATGGTATCAGACGACTCCACC 218354 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | || || |||||||| || || || |||||||||||| Sbjct 218353 TCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCATG 218306 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| || | ||| | || || || || || || ||||| ||| || Sbjct 218077 CCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCC 218018 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || || ||||| ||||| ||||||| || ||||| ||||| || Sbjct 218017 AGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGCGGG 217958 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| ||||||| ||||| | |||| |||||| | | ||| || Sbjct 217957 ATGCCCTCCTTGTCTTGGATTTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACC 217898 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || || || || || || || || |||||||| Sbjct 217897 TCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 217851 >seq32 Length=314566 Score = 123 bits (136), Expect = 2e-23 Identities = 301/449 (67%), Gaps = 9/449 (2%) Strand=Plus/Minus Query 47133 GCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTC--TCGGGCAGCTTTG 47190 ||| |||| ||| | || |||||| ||||||||| |||||||| | | ||| || | Sbjct 225408 GCCCAACGATTGGTTGCCTTCGCCGCTGTCGAGGGCATCTTCTTCAGTGGTGCA--TTCG 225351 Query 47191 CGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGC 47250 || | || |||| | || | || | |||||||| || || || ||||| | Sbjct 225350 CGTCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCAAACGAAC 225291 Query 47251 TAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAG 47310 | || || | ||||| || |||||||| ||||||| || || || || | || Sbjct 225290 TCATATCCCGTGACGAGGGTTTGCACACCGACTTTGCATGCCTG--CTGCA-CTCTCATC 225234 Query 47311 TCGATCAAA-AGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATT 47369 || | |||| || | | || | | || || || | |||| |||||| ||||| Sbjct 225233 TCAAGCAAAGAGCAAG-CAAGCAAATCATCCAAGAAATCATCACCGATGCCGTCACCATT 225175 Query 47370 GAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATG 47429 ||| || || | | ||||||||||| || | | || |||||| | || Sbjct 225174 GAGCAAGATTTCCTGACGGAGGCTCTGCCGTGCGCTCTTCTCGGCATGAACTCCACACTG 225115 Query 47430 ATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAG 47489 |||| | ||||||||||| || |||||||||||| | ||| || | || ||| Sbjct 225114 ATGAAGCAATACATCGAATTCGTTGCCGACCGCCTGTTGGTTGCTCTCGGGAATGAAAAG 225055 Query 47490 ATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACC 47549 | ||| | || | |||||| || || |||||| | || || || || | ||||||||| Sbjct 225054 GTGTACAAGACAGCGAATCCGTTTGATTTTATGGAGAATATCTCCCTGGGTGGCAAGACC 224995 Query 47550 AACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||||||| |||||||| || || ||||| Sbjct 224994 AACTTTTTTGAGAAGCGAGTTGGTGAATA 224966 >seq25 Length=408197 Score = 113 bits (124), Expect = 4e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || ||||| ||||| ||| ||| || || ||| || ||||| || ||||| ||||| Sbjct 312413 TTCTGAATGTTGTAGTCGGCCAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATC 312472 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| |||||||| ||||||||||||||| ||| || ||||| | ||| Sbjct 312473 AAACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 312532 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||| | |||||| |||| || | || ||||| ||||| || || |||||| Sbjct 312533 ATCGTGTCGGAGGACTCGACCTCGAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAA 312592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499973817360