Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29]
139 sequences; 33,567,624 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq31 107 2e-18
seq1 104 2e-17
>seq31
Length=345369
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| ||||| || || |||||||| ||||| || || ||| | ||| ||| ||
Sbjct 217831 ACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCTTCG 217772
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| ||||| || || | ||||| || |||||||| ||||| ||||| || || ||||||
Sbjct 217771 AGCTGTTTACCAGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCTTGA 217712
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
||||| |||| || | ||||| |||||||| || ||||| || | || ||
Sbjct 217711 ATTTTCGACTTGACATTGTCGATAGTGTCAGAAGACTCCACCTCGAGGGTGATGGTCTTT 217652
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || || ||||| || ||||||||
Sbjct 217651 CCGGTGAGGGTCTTTACGAAGATTTGCAT 217623
Score = 105 bits (116), Expect = 6e-18
Identities = 166/238 (70%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || ||||| || | || || ||||| || || |||||||| ||||| || || |||
Sbjct 218080 ATGCCGCCGCGCAGGCGCAGAACGAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCG 218021
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| || || | |||||| || || | ||||| ||||||||||| |||
Sbjct 218020 GCCAGGGTGCGGCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGC 217961
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| ||||| || || ||||| ||||| |||| || | |||||||||||||||
Sbjct 217960 GGGATGCCCTCCTTGTCTTGGATTTTCGCCTTGACATTGTCGATGGTGTCGGAAGACTCC 217901
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348
|| || || || | || || || || || || || || || || ||||| ||| ||
Sbjct 217900 ACCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCATACCGCCAC 217843
Score = 87.8 bits (96), Expect = 2e-12
Identities = 162/237 (68%), Gaps = 2/237 (1%)
Strand=Plus/Minus
Query 45106 ATTTTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATT 45163
|| ||||| || || || || | | ||| || |||| ||| || |||||||| || ||
Sbjct 218543 ATCTTATTGGCCACCACGCAGGCGGAGCACCAGGTGCAACGTCGACTCCTTTTGAATGTT 218484
Query 45164 ATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTG 45223
|| ||| | |||| | ||| || | || || || || | || | ||| |||||
Sbjct 218483 GTAGTCGGCTAGGGTTCTCCCATCCTCAAGCTGCTTACCAGCAAAGATGAGTCGCTGCTG 218424
Query 45224 GTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGA 45283
|| || |||||||| || || ||||||||||| || | || | ||| || ||
Sbjct 218423 ATCAGGAGGAATGCCCTCCTTGTCTTGAATTTTCGACTTCACATTATCAATGGTATCAGA 218364
Query 45284 AGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || ||||| || | || || ||||| || || || || ||||| |||||
Sbjct 218363 CGACTCCACCTCGAGCGTGATGGTCTTCCCGGTCAGCGTCTTGACGAAAATCTGCAT 218307
>seq1
Length=1559860
Score = 104 bits (114), Expect = 2e-17
Identities = 293/443 (66%), Gaps = 9/443 (2%)
Strand=Plus/Minus
Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957
||| | | |||||| ||| || ||| ||||||| || ||| | ||| | ||| |
Sbjct 379340 AAGATTGTCGAACGACCTCAGCACATGATCATGCGTGTTGCTGTCGGCATCTGGGGAGAC 379281
Query 122958 GACATCGAAAACGCGACC--GAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACG 123015
|||| || |||| || ||||| ||| | | ||||| ||||| ||||| ||||
Sbjct 379280 AACATTGAG--CGCGTCCTGGAAACCTACAACCTCATGTCCAGTAAATTCTTCACCCACG 379223
Query 123016 CGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGC 123075
| || || | ||| ||| |||||| | |||| | || ||||| || |
Sbjct 379222 CCTCACCTACCCTCTTCAACGCGGGCACGCCTCAGTGTCAGCTTTCCTCGTGCTTCCTCG 379163
Query 123076 TCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGA-TTGCGCGTTG 123134
|| | || |||||||||||| || ||||| || ||| | | || |||||| ||
Sbjct 379162 TCGACATGAAGGAAGACAGCATCGAGGGCATCTACGACACTCT-CAAGACTTGCGCCATG 379104
Query 123135 ATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGC 123194
||||| ||| | | |||||| || ||| ||||||| ||| | | | | |||| |
Sbjct 379103 ATTTCTAAAATGGCCGGCGGTATCGGCCTGAACGTCCACCGCATTCGTGCTACCGGATCC 379044
Query 123195 CGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAAT 123254
||| ||||| |||| | | | ||| ||| ||||||||||||| | |||
Sbjct 379043 TACATTGCCGGCACCAACGGCACCTCGAACGGCGTCGTTCCCATGCTGCGAGTCTTCAAC 378984
Query 123255 AACGCCGTGCGGCACGTCGACCAGGGCGGCAA-ACGCAA--AGGCGCGATGGCGATCTAT 123311
||| | | | |||||||||| |||||||| | || | ||||| | || |||||
Sbjct 378983 AACACTGCCAGATACGTCGACCAAGGCGGCAACAAGCGACCGGGCGCCTTCGCCATCTAC 378924
Query 123312 CTAGAACCGTGGCACGTTGATGT 123334
|| || || ||||||| |||||
Sbjct 378923 CTGGAGCCCTGGCACGCCGATGT 378901
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452002414644440
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