Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilaginoidea_20virens_20[genbank_20GCA_5F000965225.2_202016-01-29] 139 sequences; 33,567,624 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 232 8e-56 seq32 95.1 1e-14 >seq1 Length=1559860 Score = 232 bits (256), Expect = 8e-56 Identities = 1167/1843 (63%), Gaps = 31/1843 (2%) Strand=Plus/Plus Query 115519 TCAAGGCTGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTC 115578 |||| | ||||||| ||||| ||| ||| | | || | ||||||||| || ||| Sbjct 377563 TCAACGGTGAACTGGATGGGGGCCGCGGCGGCTTGCGTGCGCAAGTAGTACATGCCAGTC 377622 Query 115579 TTGAGCCCCTGCTTCCA---GGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGA 115635 ||||| ||| ||||||| |||| | ||||| || | | |||| | ||||| Sbjct 377623 TTGAGACCCAGCTTCCACCCGGCAAAG---TGCATCGACGTGATCTTGCCCATGGTTGGG 377679 Query 115636 CTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCC 115695 | |||| | ||| | | ||||| || ||||| ||| || || || || ||| Sbjct 377680 TCCTTCATGTGAATGTTGAGAGACTGGGACTGGTCGATAAAGGCACCGCGGTCGGCGGCC 377739 Query 115696 ATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCA 115755 || | | ||||| | | |||||||| || || |||| || ||| | || Sbjct 377740 ATCTGCACCACATGACGCTGCGAAATTTCCCAGACCGTCTTGTACAGAGCCTTTACCTCG 377799 Query 115756 TCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGA---GATCCTTC 115812 | || || | ||| || ||||| ||||| || | | |||| ||| |||| Sbjct 377800 CCGGGAATGTTGGGGATGTTCTGGATCGAGCCGTT---CTCGGCAATGATGCGATTCTTC 377856 Query 115813 ATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACA 115872 || | | |||||| ||||| || | |||||||| | || ||||| || Sbjct 377857 ATGGCGTCTGACCACAGACCCATGTCGACGAGATCCTTGAGAAGCCATGGGTTGACGACC 377916 Query 115873 ACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCAC 115932 ||||| ||||| ||| ||||| | | || ||||||| |||||| ||||| |||||| Sbjct 377917 TGGAACTCGCCCGCCAGGACGCGTCGCTGGTAAATGTTGGACGTGTAGGGCTCGAAGCAC 377976 Query 115933 TCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTG 115992 || ||||| |||| || || | ||||| || ||||||||||| || | || || | Sbjct 377977 TCGTTGTTGCCCAGAATCTGCGACGTGGACGCCGTGGGCATGGGCGCGAGCAGCAGCGAG 378036 Query 115993 TTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTC---GTAGTTGAGC 116049 ||||| | || | || | || | |||||||||| ||||| || ||| | | Sbjct 378037 TTGCGAATCCCGTGCTCCTTGATCTGCTCCTTGAGGGAATCCCACTCCCACAAGTCGGAC 378096 Query 116050 TTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCA 116109 | | | | | |||||| |||||||| ||||| |||| || || || ||||||| Sbjct 378097 ---GGCGTCACGTTCCACATGTCAAACTGCAGGATGCCTTCAGAGGCCGGAGATCCCTTG 378153 Query 116110 AATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGA 116169 || || || || ||||| ||| |||| || |||| | ||| ||||| Sbjct 378154 AACGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTCCACCGACGCCGTCAAGGCGGCGTGG 378213 Query 116170 TACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGA 116229 || || ||||||||||| | |||| | |||||| || ||||| | | Sbjct 378214 TAGATGGTCTCAAAAATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTCAAAGGGCATG 378273 Query 116230 CGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTC 116289 || | || || | || || | ||||| ||||||| ||||| || ||||| | | Sbjct 378274 CGAAGCGCAAGGAAGGCGTCGGCCAAGCCTTGAACACCGACACCAATGGGACGATGCCGC 378333 Query 116290 ATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGA 116349 || || || || || | ||||| || || ||||| | | | || ||| Sbjct 378334 ATGTTGCTGTTGCGTGCTTCTTGGACGGGGTAGTGGTTGACGTCGATGATCTTGTTGAGA 378393 Query 116350 TTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCT 116409 ||| | || || |||| || || ||||||| | | || | ||| || Sbjct 378394 TTTCGGACAACCACGCGGGTGACGTCGTGCAGCTTTTGGAAGTCGTACTTGCCTTGGTCG 378453 Query 116410 TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 116469 | | ||| | || ||||| | || || || || || || | ||| || Sbjct 378454 TAGTCCACAAAGGCGGGCAGGGCAAGGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGG 378513 Query 116470 TCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTT 116529 | | |||||| ||||| || || || | || || || |||||| ||||||||||| Sbjct 378514 GCCGAGTACTCGATAATCTCGGTGCAGAGGTTGGAGCTGCGAATGGTTCCCAAGTTCTTC 378573 Query 116530 TGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTT 116589 || || ||| |||| || ||||||||| |||||| | || | || ||||| || Sbjct 378574 TGGTTGCTCTTCCTGTTGCAATGATCCTTGTACAGCATAAAGGGGTTGCCAGTCTCGGTC 378633 Query 116590 TGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCC 116648 || | || ||| || | | ||| | | || | ||| | | || | | | || || Sbjct 378634 TGAGCCTCGAGGATCGAGTACCACAGCTTCTG-GGCGCGGATTGTCTTGCGGCCACGGCC 378692 Query 116649 CTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCC 116707 || |||||||||| || | ||||||||||| || || ||| || | ||||| Sbjct 378693 TTCGCGCTCGTACTTTTCATACAAAGCCTCAAACTCGTC-GCCGTAGCAGTCGGCGAGCC 378751 Query 116708 CTGGTGCCTT-ATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 116766 | || || || | || || | ||| | ||| | ||| || ||| || ||||||||| Sbjct 378752 CAGG-GCATTCGTTGGGGCACATGAGGGTCCAGTCGCCATTCTTCTCGACACGCTTCATG 378810 Query 116767 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 116826 |||||||| |||||||| ||||| |||||| || ||| ||| |||| || | || Sbjct 378811 AAGAGGTCGGGGATCCACAGCGCAAGGAAGAGGTCGCGAGCGCGGACTTCCTCCTTGCCG 378870 Query 116827 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 116886 || || | | || | || || | || ||| |||||||| || |||||||| | Sbjct 378871 TGGTTCTTTCTGAGATCAAGGAATTCAAAGACATCGGCGTGCCAGGGCTCCAGGTAGATG 378930 Query 116887 GCGATTGACCCC--TTGCGACGACCAGCC-TGGTTTACATACCTCGCCGTTGCGTTAAAT 116943 |||| | ||| | || | ||| |||| || || || || || ||| || Sbjct 378931 GCGAAGGCGCCCGGTCGCTTGTTGCCGCCTTGGTCGACGTATCTGGCAGTGTTGTTGAAG 378990 Query 116944 ACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTG 117003 || || ||||| |||| || || | || ||| || || || ||| || | Sbjct 378991 ACTCGCAGCATGGGAACGACGCCGTTCGAGGTGCCGTTGGTGCCGGCAATGTAGGATCCG 379050 Query 117004 TTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCG 117063 | || | | ||||| || || || ||||| || ||| || || || ||| Sbjct 379051 GTAGCACGAATGCGGTGGACGTTCAGGCCGATACCGCCGGCCATTTTAGAAATCATGGCG 379110 Query 117064 CACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAG 117123 || | ||||| || ||||||| || ||||| ||| |||| | ||| ||||||| Sbjct 379111 CAAGTCTTGAGAGTGTCGTAGATGCCCTCGATGCTGTCTTCCTTCATGTCGACGAGGAAG 379170 Query 117124 CAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATG 117183 || || | || | || || || |||||||||||||| |||| |||||| || Sbjct 379171 CACGAGGAAAGCTGACACTGAGGCGTGCCCGCGTTGAAGAGGGTAGGTGAGGCGTGGGTG 379230 Query 117184 AACA--TACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGT 117241 || | | || |||||| | |||||| |||| ||| ||||| || || Sbjct 379231 AAGAATTTACT--GGACATGAGGTTGTAGGTTTCCAGGACGCGCTCAATGTTGTCTCCCC 379288 Query 117242 GAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGA 117301 || |||| | || ||||| | ||||| || ||| ||| | | | || || | Sbjct 379289 AGATGCCGACAGCAACACGCATGATCATGTGCTGAGGTCGTTCGACAATCTTGCCGTCCA 379348 Query 117302 GCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344 || || |||| || ||||| ||||||| |||||| || Sbjct 379349 GCTTCAGGAGATACGATCGCTCCAGCGTCTTGAAACCAAAGTA 379391 >seq32 Length=314566 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | ||||||||||||||| |||||||| || |||||| || || Sbjct 225254 GCAAAGTCGGTGTGCAAACCCTCGTCACGGGATATGAGTTCGTTTGAGAAGGTAAGCCCG 225313 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || |||||||| | ||| || || | |||| ||| ||||||||| Sbjct 225314 GGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGACGCGAATGCACCACTGAAGAAGATG 225373 Query 127640 CCCTCCACACACGCGAACGCAA 127661 ||||| ||| ||||| |||| Sbjct 225374 CCCTCGACAGCGGCGAAGGCAA 225395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506134031240